Gene detail

Detail information of GWHGAAZE024552

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007013670.1	2.6798E-137	DNA-binding protein phosphatase 1 isoform 2 [Theobroma cacao]
COG	YP_001277088.1	0.0000003	protein phosphatase 2C domain-containing protein
Swissprot	tr\|Q5SMK6\|P2C54_ORYSJ	2E-117	Probable protein phosphatase 2C 54
trEMBL	tr\|A0A061GW02\|A0A061GW02_THECC	1E-137	DNA-binding protein phosphatase 1 isoform 2 {ECO:0000313\|EMBL:EOY31289.1}
TAIR10	AT2G25620.1	1E-73	DNA-binding protein phosphatase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45028779	45031457	+
GWHAAZE00000007	mRNA	45028779	45031457	+
GWHAAZE00000007	exon	45028779	45028979	+
GWHAAZE00000007	exon	45030846	45031457	+
GWHAAZE00000007	CDS	45028779	45028979	+
GWHAAZE00000007	CDS	45030846	45031457	+

Transcript Sequence
>GWHTAAZE024586 ATGGAAAGCATTTGTGAGGATACAGTTGTTGTAGACAAGAAACAGAATTTTTTAAATGACTTCAACCCGGCCCTTCGTTCTGGAGAGTGGTCCGATATCGGCCATCGTTCTTATATGGAGGACACTCATATATGTATTACGAACCTAGCTAAGAAGTTCGGTTGCAATTTATTCGGTGAGGAAGCTATTTCCTTCTATGGTAACATATATTTTTGCGAATTTGCTAATCCTAGATTATCATTTTTGAGCAGATCTTTACTCGTGGCAAATGCCGGAGATTGCCGGGCAGTTCTATCTCGCCACGGCATGGCCATAGAAATGTCGAAAGATCACCGACCGTGCTGTGACAATGAAAGGATCCGGATAGAATCCTTGGGCGGGTTCATTGACGACGGTTACTTGAACGGTCAATTAGCCGTAACCCGAGCCTTGGGAGATTGGCACATCAAAGGGCTAAAGGAATTCGGCGGAAGGGTGGGACCCTTGAGTGCTGAACCTGAACTTAAACTTTTAACACTGACAAAAGATGACGAGTTTTTGATAATCGGTAGTGATGGGATATGGGACGTGTTTAGAAGTCAAAACGCCGTTGACTTTATTCGGAGGAGGCTACAAGAGCACAATGATGCCAAGTTGTGTTGTAAGGAAGTGGTGGAAGAAGCGAAGAAGAGGGGGGCGATCGATAATTTGACGGTGGTGATTGTTTGTTTCCACTCGGACCCGCCGCCTCATGTGGCGGTGCAGAGAACGAGAGTGAGGCGAAGCATTTCAGCCGAGGGGCTTCAGAATTTGAAATTCTATCTTGAAGGGTGA

Network for GWHGAAZE024552

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	84	229	1.30E-48

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	DBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.469
	SRR3591706	second leaf	8.971
	SRR3591707	mature leaf	16.847
	SRR3591708	Shoot apex	8.606
	SRR3591709	Stem	9.698
	SRR3591710	White floral bud	21.068
	SRR3591711	White flower	46.034
	SRR3591712	Green floral bud	13.565
	SRR3591713	Yellow flower	10.116
SRP173429	SRR8316895	Juvenile bud stage	5.434
	SRR8316896	Juvenile bud stage	7.660
	SRR8316897	Juvenile bud stage	3.145
	SRR8316894	Third green stage	2.308
	SRR8316900	Third green stage	8.073
	SRR8316901	Third green stage	8.901
	SRR8316898	Complete white stage	2.226
	SRR8316899	Complete white stage	12.481
	SRR8316903	Complete white stage	7.047
	SRR8316902	Silver flowering stage	10.986
	SRR8316904	Silver flowering stage	8.716
	SRR8316905	Silver flowering stage	2.536
	SRR8316906	Gold flowering stage	9.558
	SRR8316907	Gold flowering stage	7.231
	SRR8316908	Gold flowering stage	6.519
SRP132670	SRR6706286	Control	14.163
	SRR6706287	Light intensity 50%	13.096
	SRR6706288	Light intensity 20%	11.823
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.234
	CNS0095593	Slightly white alabastrum(diploid) 2	4.436
	CNS0095594	Slightly white alabastrum(diploid) 3	5.297
	CNS0095595	Whole white alabastrum(diploid) 2	5.189
	CNS0095596	Whole white alabastrum(diploid) 3	4.310
	CNS0095597	Whole white alabastrum(diploid) 4	5.635
	CNS0095598	Silvery flower (diploied) 1	8.564
	CNS0095599	Silvery flower (diploied) 2	18.531
	CNS0095600	Silvery flower (diploied) 3	19.438
	CNS0095601	Golden flower (diploid) 1	25.202
	CNS0095602	Golden flower (diploid) 2	15.712
	CNS0095603	Golden flower (diploid) 3	14.129
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.290
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.727
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.296
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.035
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.514
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.043
	CNS0095610	Silvery flower (tetraploid) 1	34.341
	CNS0095611	Silvery flower (tetraploid) 2	14.471
	CNS0095612	Silvery flower (tetraploid) 3	10.397
	CNS0095613	Golden flower (tetraploid) 1	8.523
	CNS0095614	Golden flower (tetraploid) 2	13.808
	CNS0095615	Golden flower (tetraploid) 3	3.103
CRA001975	CRR073297	Stem 1	4.233
	CRR073298	Stem 2	3.975
	CRR073299	Stem 3	2.661
	CRR073300	Leaf 1	7.406
	CRR073301	Leaf 2	7.949
	CRR073302	Leaf 3	6.222
	CRR073303	Juvenile bud 1	8.352
	CRR073304	Juvenile bud 2	9.519
	CRR073305	Juvenile bud 3	6.250
	CRR073306	Third green 1	13.282
	CRR073307	Third green 2	6.906
	CRR073308	Third green 3	11.469
	CRR073309	Second white 1	21.774
	CRR073310	Second white 2	10.363
	CRR073311	Second white 3	13.671
	CRR073312	Silver flowering 1	6.734
	CRR073313	Silver flowering 2	7.271
	CRR073314	Silver flowering 3	8.323
	CRR073315	Gold flowering 1	4.322
	CRR073316	Gold flowering 2	4.538
	CRR073317	Gold flowering 3	4.394
	CRR073318	Tawny withering 1	7.605
	CRR073319	Tawny withering 2	9.981
	CRR073320	Tawny withering 3	4.913