Gene detail

Detail information of GWHGAAZE024581

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04262.1	0	unnamed protein product [Coffea canephora]
COG	YP_007054695.1	2E-84	solanesyl diphosphate synthase
Swissprot	tr\|Q653T6\|SPS1_ORYSJ	0	Solanesyl-diphosphate synthase 1, mitochondrial (Precursor)
trEMBL	tr\|A0A068U7M0\|A0A068U7M0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04262.1}
TAIR10	AT2G34630.2	7E-141	geranyl diphosphate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45547539	45556430	+
GWHAAZE00000007	mRNA	45547539	45556430	+
GWHAAZE00000007	exon	45547539	45547625	+
GWHAAZE00000007	exon	45547727	45547843	+
GWHAAZE00000007	exon	45547999	45548070	+
GWHAAZE00000007	exon	45550366	45550497	+
GWHAAZE00000007	exon	45550726	45550812	+
GWHAAZE00000007	exon	45551444	45551515	+
GWHAAZE00000007	exon	45552033	45552118	+
GWHAAZE00000007	exon	45552872	45553004	+
GWHAAZE00000007	exon	45553762	45553851	+
GWHAAZE00000007	exon	45553929	45554027	+
GWHAAZE00000007	exon	45556055	45556430	+
GWHAAZE00000007	CDS	45547539	45547625	+
GWHAAZE00000007	CDS	45547727	45547843	+
GWHAAZE00000007	CDS	45547999	45548070	+
GWHAAZE00000007	CDS	45550366	45550497	+
GWHAAZE00000007	CDS	45550726	45550812	+
GWHAAZE00000007	CDS	45551444	45551515	+
GWHAAZE00000007	CDS	45552033	45552118	+
GWHAAZE00000007	CDS	45552872	45553004	+
GWHAAZE00000007	CDS	45553762	45553851	+
GWHAAZE00000007	CDS	45553929	45554027	+
GWHAAZE00000007	CDS	45556055	45556201	+
GWHAAZE00000007	three_prime_UTR	45556202	45556430	+

Transcript Sequence
>GWHTAAZE024615 GTTTTGGGTTGCAGAGTAATTTATTCCTGGATTTCAAGTGCCTTTAATAGTGTTGGACATCAAATTCAGCATCAGAGCAGGCCCACAGCCATCGAGCCATCTGACATTTCTTTGTCCCATCAGGACCAGGTGGATCCTTTTTCTCTTGTTGCTGATGAACTATCAATTCTTGCTAATAGGTTGCGAGCAATGGTAGTTGCAGAGGTCCCGAAACTTGCATCAGCTGCTGAGTATTTCTTTAAGATGGGTGTGGAAGGAAAGAGGTTTCGACCCACGGTTCTGCTGTTGATGGCAACAGCTTTAAATGTACCTATATCTGAACCAACTCCTCGCGGTCATGTTGATATGTTACCAGCAGAGTTACGTACAAGACAGCAGTGTATAGCTGAGATTACGGAGATGATCCATGTCGCCAGCCTTCTTCATGATGATGTACTGGATGATGCTGATACAAGACGCGGGATTGGATCATTAAACTTTGTAATGGGTAATAAGCTGGCAGTATTGGCGGGAGATTTCCTGCTTTCCAGAGCTTGTGTAGCACTTGCTTCTTTGAAGAACACTGAGGTTGTATCACTTCTAGCAGAAGTTGTAGAGCATCTTGTTACAGGGGAGACCATGCAGATGGCTACTACATCTGAACAACGTTGTAGCATGGAGTACTATCTGCAAAAGACATATTACAAGACTGCGTCATTGATATCAAACAGCTGCAAGGCAATTGCGCTTCTTGCAGGTCAAACTGCAGAAGTTTCAATGCTGGCATACGAGTATGGGAAAAATTTGGGTTTAGCATTTCAGTTAATTGATGACATCCTAGATTTCACAGGCACTTCATCATCTCTTGGAAAGGGCTCGTTATCTGACATTCGCCATGGAATTGTAACGGCTCCGATATTATTTGCCATTGAAGAGTTCCCAGAATTGCGGGCAGTTGTTGATCAGGGATTTGACAACCCTGCAGATGTGGATCTTGCTCTTGACTACCTTGGAAAGAGTCGAGGAATAGAGAGAACAAGGGAGCTGGCGACGAAGCATGCAAACCTTGCCTCGGCGGCAATCGATTCTCTGCCGGAAAATGATAAGATGAGGACGTTAAAAAATCGAGGCGGGCGCTTGTAGAATTAACACAAAGAGTTATTACGAGATCGAAGTAAAAAATAGTAATAAATAGGCAAAAATACTTTATACATTTTTATTTTAAGTCCAAATATTTTTGCTTGTTTATCACGAGGAATTCAATTGGTATTTTTACTTTAATTATTTTTCTGGCTTGTCTTTCAATAATCCTCACACTGCAGCTGTAATTGGAACTGTATTGCGAAGTAGTAAATTTACATTATAACAGAAA

Network for GWHGAAZE024581

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00348.18	polyprenyl_synt	71	328	2.20E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14066	GPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.749
	SRR3591706	second leaf	26.408
	SRR3591707	mature leaf	27.811
	SRR3591708	Shoot apex	18.768
	SRR3591709	Stem	15.412
	SRR3591710	White floral bud	15.232
	SRR3591711	White flower	24.089
	SRR3591712	Green floral bud	13.527
	SRR3591713	Yellow flower	15.011
SRP173429	SRR8316895	Juvenile bud stage	16.763
	SRR8316896	Juvenile bud stage	21.119
	SRR8316897	Juvenile bud stage	10.359
	SRR8316894	Third green stage	9.827
	SRR8316900	Third green stage	25.102
	SRR8316901	Third green stage	24.523
	SRR8316898	Complete white stage	9.689
	SRR8316899	Complete white stage	33.567
	SRR8316903	Complete white stage	15.074
	SRR8316902	Silver flowering stage	13.952
	SRR8316904	Silver flowering stage	16.336
	SRR8316905	Silver flowering stage	7.127
	SRR8316906	Gold flowering stage	34.026
	SRR8316907	Gold flowering stage	32.354
	SRR8316908	Gold flowering stage	35.190
SRP132670	SRR6706286	Control	22.626
	SRR6706287	Light intensity 50%	24.836
	SRR6706288	Light intensity 20%	27.240
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.533
	CNS0095593	Slightly white alabastrum(diploid) 2	23.801
	CNS0095594	Slightly white alabastrum(diploid) 3	22.578
	CNS0095595	Whole white alabastrum(diploid) 2	21.495
	CNS0095596	Whole white alabastrum(diploid) 3	18.841
	CNS0095597	Whole white alabastrum(diploid) 4	20.488
	CNS0095598	Silvery flower (diploied) 1	20.867
	CNS0095599	Silvery flower (diploied) 2	20.402
	CNS0095600	Silvery flower (diploied) 3	16.028
	CNS0095601	Golden flower (diploid) 1	15.716
	CNS0095602	Golden flower (diploid) 2	14.035
	CNS0095603	Golden flower (diploid) 3	14.258
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.188
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.829
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.236
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.367
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.741
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.317
	CNS0095610	Silvery flower (tetraploid) 1	36.789
	CNS0095611	Silvery flower (tetraploid) 2	26.351
	CNS0095612	Silvery flower (tetraploid) 3	20.873
	CNS0095613	Golden flower (tetraploid) 1	20.386
	CNS0095614	Golden flower (tetraploid) 2	23.564
	CNS0095615	Golden flower (tetraploid) 3	16.384
CRA001975	CRR073297	Stem 1	18.462
	CRR073298	Stem 2	15.772
	CRR073299	Stem 3	14.596
	CRR073300	Leaf 1	20.341
	CRR073301	Leaf 2	18.611
	CRR073302	Leaf 3	14.459
	CRR073303	Juvenile bud 1	19.552
	CRR073304	Juvenile bud 2	12.898
	CRR073305	Juvenile bud 3	17.850
	CRR073306	Third green 1	4.406
	CRR073307	Third green 2	4.351
	CRR073308	Third green 3	4.462
	CRR073309	Second white 1	10.254
	CRR073310	Second white 2	15.296
	CRR073311	Second white 3	11.064
	CRR073312	Silver flowering 1	2.402
	CRR073313	Silver flowering 2	2.283
	CRR073314	Silver flowering 3	3.929
	CRR073315	Gold flowering 1	6.202
	CRR073316	Gold flowering 2	8.451
	CRR073317	Gold flowering 3	5.891
	CRR073318	Tawny withering 1	7.467
	CRR073319	Tawny withering 2	10.117
	CRR073320	Tawny withering 3	8.557