Gene detail

Detail information of GWHGAAZE024584

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10212.1	2.6245E-134	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UPL2\|A0A068UPL2_COFCA	1E-134	Coffea canephora DH200=94 genomic scaffold, scaffold_43 {ECO:0000313\|EMBL:CDP10212.1}
TAIR10	AT5G58020.1	5E-82	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45574970	45576010	-
GWHAAZE00000007	mRNA	45574970	45576010	-
GWHAAZE00000007	exon	45575378	45576010	-
GWHAAZE00000007	exon	45574970	45575266	-
GWHAAZE00000007	CDS	45575378	45576010	-
GWHAAZE00000007	CDS	45574970	45575266	-

Transcript Sequence
>GWHTAAZE024618 CCCAATTCCCTCTTTTTCACCTTCAATGGCCTTCCCCTTTCAGATTCAGCCACAATCAAAAATTCCCAAATAATCCCTCTCTCCACCCTCACCCTCCGCCTCCGCCTCCCCGGTGGCGGTGGTGATGGCGGAGCCACCGGGGCCGAGTCCCGGGACTGTTATTTAAACATGTATGCGGTTAAAAAACCCGACAAGGTTGATCCGAACGAGCAAAGGCTCAATAAGTGGTTGAATTGCGCTCTATCCAATGAGCCCTTGAGTCATCCTATTGTGGTGGATTTTCTTGGAAATGTGTTTAATAAGGAGAGGTTGGTTGAGTGCTTATTGGCTAAGAAATTGCCTAGGGCTTTTGGTCATATAAAAGGGTTGAAGGATATGATTGATGTTGAGTTGAATATGATACCTGGATTGGATTCCGAATTGAATTCAGGTCATTTGAGTAGTGGGAATCGGTTTCAGTGCCCGATTACAGGGTTGGAGTTTAATGGGAAGTACAAGTTTTTTGCGTTGAGGAGTTGTGGGCATGCGTTGAGTGCCAAGGCTTTGAAGGAGATTAAATCATCTAAATGTCTTGTTTGTCACAAGGAGTTCACGGAGTCGGATAAGATTGTGATAAATGGAAGTGAAGAAGAGGTGGAGGTTTCAAGATTGAGTGGGACTAAGCATGGGACTGATGGCAAGGGGACGGATAATGTTTCTTTGAAGGTTGAAGGGAATATTGGGAAGGTTGTTAATGGTGGGATTAAGGTTAAAGGTGTAAATAAGGGCGAGAGTAATAATGGTAATGGTGGTGGAAAAAGGTTTAAGGCTGGTGATAATGCACCTGCTAATGCTACCAAGGAAGTTTATGCATCTATTTTCACCTCATCAAGGAAGTCTGACTTTAAAGAGACTTATAGTTGCAGATCATTGCCACTTGGGAGAAACTGA

Network for GWHGAAZE024584

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04641.13	Rtf2	39	293	3.10E-64

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.076
	SRR3591706	second leaf	29.899
	SRR3591707	mature leaf	37.984
	SRR3591708	Shoot apex	35.949
	SRR3591709	Stem	43.553
	SRR3591710	White floral bud	52.614
	SRR3591711	White flower	59.878
	SRR3591712	Green floral bud	50.292
	SRR3591713	Yellow flower	62.119
SRP173429	SRR8316895	Juvenile bud stage	27.821
	SRR8316896	Juvenile bud stage	31.882
	SRR8316897	Juvenile bud stage	14.425
	SRR8316894	Third green stage	15.660
	SRR8316900	Third green stage	45.411
	SRR8316901	Third green stage	42.766
	SRR8316898	Complete white stage	16.176
	SRR8316899	Complete white stage	56.222
	SRR8316903	Complete white stage	34.566
	SRR8316902	Silver flowering stage	23.528
	SRR8316904	Silver flowering stage	33.240
	SRR8316905	Silver flowering stage	16.905
	SRR8316906	Gold flowering stage	45.639
	SRR8316907	Gold flowering stage	42.019
	SRR8316908	Gold flowering stage	49.237
SRP132670	SRR6706286	Control	37.063
	SRR6706287	Light intensity 50%	38.519
	SRR6706288	Light intensity 20%	38.736
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.296
	CNS0095593	Slightly white alabastrum(diploid) 2	38.751
	CNS0095594	Slightly white alabastrum(diploid) 3	40.905
	CNS0095595	Whole white alabastrum(diploid) 2	39.242
	CNS0095596	Whole white alabastrum(diploid) 3	34.005
	CNS0095597	Whole white alabastrum(diploid) 4	36.399
	CNS0095598	Silvery flower (diploied) 1	43.320
	CNS0095599	Silvery flower (diploied) 2	40.943
	CNS0095600	Silvery flower (diploied) 3	52.747
	CNS0095601	Golden flower (diploid) 1	42.398
	CNS0095602	Golden flower (diploid) 2	49.520
	CNS0095603	Golden flower (diploid) 3	48.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.705
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.906
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.692
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.635
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.460
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.031
	CNS0095610	Silvery flower (tetraploid) 1	56.318
	CNS0095611	Silvery flower (tetraploid) 2	45.163
	CNS0095612	Silvery flower (tetraploid) 3	42.452
	CNS0095613	Golden flower (tetraploid) 1	54.665
	CNS0095614	Golden flower (tetraploid) 2	56.189
	CNS0095615	Golden flower (tetraploid) 3	49.941
CRA001975	CRR073297	Stem 1	29.261
	CRR073298	Stem 2	39.193
	CRR073299	Stem 3	33.363
	CRR073300	Leaf 1	35.324
	CRR073301	Leaf 2	39.232
	CRR073302	Leaf 3	28.362
	CRR073303	Juvenile bud 1	35.517
	CRR073304	Juvenile bud 2	42.481
	CRR073305	Juvenile bud 3	45.214
	CRR073306	Third green 1	31.535
	CRR073307	Third green 2	25.290
	CRR073308	Third green 3	28.114
	CRR073309	Second white 1	32.981
	CRR073310	Second white 2	35.375
	CRR073311	Second white 3	31.950
	CRR073312	Silver flowering 1	36.807
	CRR073313	Silver flowering 2	34.658
	CRR073314	Silver flowering 3	35.412
	CRR073315	Gold flowering 1	32.553
	CRR073316	Gold flowering 2	31.361
	CRR073317	Gold flowering 3	26.271
	CRR073318	Tawny withering 1	20.729
	CRR073319	Tawny withering 2	21.315
	CRR073320	Tawny withering 3	26.469