Gene detail

Detail information of GWHGAAZE024587

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006343668.1	0	PREDICTED: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase-like isoform X2 [Solanum tuberosum]
COG	YP_007420085.1	8E-177	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
Swissprot	tr\|P93338\|GAPN_NICPL	0	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
trEMBL	tr\|M1ARW1\|M1ARW1_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400028915}
TAIR10	AT2G24270.4	0	aldehyde dehydrogenase 11A3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45638606	45644629	+
GWHAAZE00000007	mRNA	45638606	45644629	+
GWHAAZE00000007	exon	45638606	45638756	+
GWHAAZE00000007	exon	45639378	45639571	+
GWHAAZE00000007	exon	45639846	45639974	+
GWHAAZE00000007	exon	45641158	45641277	+
GWHAAZE00000007	exon	45641910	45642046	+
GWHAAZE00000007	exon	45642655	45642810	+
GWHAAZE00000007	exon	45643349	45643727	+
GWHAAZE00000007	exon	45644099	45644215	+
GWHAAZE00000007	exon	45644516	45644629	+
GWHAAZE00000007	CDS	45638606	45638756	+
GWHAAZE00000007	CDS	45639378	45639571	+
GWHAAZE00000007	CDS	45639846	45639974	+
GWHAAZE00000007	CDS	45641158	45641277	+
GWHAAZE00000007	CDS	45641910	45642046	+
GWHAAZE00000007	CDS	45642655	45642810	+
GWHAAZE00000007	CDS	45643349	45643727	+
GWHAAZE00000007	CDS	45644099	45644215	+
GWHAAZE00000007	CDS	45644516	45644629	+

Transcript Sequence
>GWHTAAZE024621 GTCGCTATGGCAGGGAGTGGAGTTTTTGCAGAGATCAAAGATGGAGAAGTGTACAAGTACTATGCTGAAGGAGAGTGGAAGACATCAGCCTCTAAAAAATCTGTTGCAATTGTCAACCCCACCACTAGAAAGACTCACTACAAGGTTCAAGCTTGTACACAAGAGGAGGTGAACAAGGTGATGGAAACGGCAAAAATTGCTCAAAAGCAGTGGGCTAAGACCCCACTTTGGAAGCGAGCCGAGCTCCTTCACAAGGCAGCAGCGATTCTCAAAGAACACAAAGCCCCCATTGCAGAGTGTTTGGTTAAAGAAATTGCAAAACCGGCCAAGGACGCGGTCACTGAGGTTGTAAGATCCGGGGATTTGATTTCATATACCGCGGAAGAAGGGGTTCGGATTTTGGGAGAGGGGAAATTTTTGGTGTCTGATAGTTTTCCCGGGAATGAGAGGACTAAGTATTGTCTAACTTCTAAGATTCCACTTGGGGTTGTTTTAGCAATTCCACCCTTCAACTATCCTGTCAACCTTGCTGTTTCCAAGATTGGCCCTGCACTAATTGCTGGAAACTCCCTTGTCCTCAAGCCTCCAACTCAGGGTGCTGTGGCTGCCCTGCATATGGTGCATTGTTTTCATTTAGCAGGTTTCCCAAAAGGCCTTATCAGCTGTATCACGGGGAAAGGCTCCGAGATTGGCGATTTCCTCACAATGCATCCTGGTGTCAACTGCATAAGCTTCACAGGCGGGGACACTGGGATTGCAATTTCAAAGAAGGCAGGCATGATTCCTCTGCAGATGGAGTTGGGAGGCAAAGACGCTTGTATCGTGCTTGAAGATGCTGACTTGGATTTGGTAGCCGCAAACATCATAAAGGGAGGCTTCTCTTACAGTGGACAAAGATGCACTGCCGTGAAGGTTGTCTTGGTGATAGAATCCGTAGCCGACACGCTCGTTGAGAAAGTGAAGGCCAAAGTGGCCAAGTTGACAGTGGGCCCACCGGAGGATGACTGTGACATCACACCGGTGGTCTCAGAGTCGTCGGCAAACTTCATAGAAGGACTAGTGATGGATGCTAAGACAAAAGGAGCTACATTTTGCCAAGAGTACAAGAGGGAGGGTAACCTTATTTGGCCCCTATTGTTAGATAATGTTCAGCCTGATATGAGGATAGCTTGGGAGGAACCGTTTGGTCCGGTTTTACCGGTCATTAGGATTAGCTCAGCTGAAGAAGGAATCAACCATTGCAATGCTAGCAATTTCGGGCTTCAGGGTTGTGTCTTCACACGGGACATCAACAAAGCAATGCTGATCAGTGATGCCATGGAGACAGGGACGGTCCAGATTAACTCGGCTCCAGCTCGCGGTCCAGATCATTTCCCGTTCCAGGGTTTGAAGGACAGTGGAATCGGATCACAAGGCATAACAAACAGTATTAATATGATGATTAAGGTCAAGACCACAGTGATTAACTTGCCGACTCCTTCCTACACCATGGGGTAA

Network for GWHGAAZE024587

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0175

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.23	Aldedh	26	485	1.30E-143

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00131	gapN	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	96.697
	SRR3591706	second leaf	956.224
	SRR3591707	mature leaf	1056.474
	SRR3591708	Shoot apex	507.619
	SRR3591709	Stem	125.656
	SRR3591710	White floral bud	112.112
	SRR3591711	White flower	111.199
	SRR3591712	Green floral bud	104.961
	SRR3591713	Yellow flower	37.974
SRP173429	SRR8316895	Juvenile bud stage	186.475
	SRR8316896	Juvenile bud stage	169.120
	SRR8316897	Juvenile bud stage	104.866
	SRR8316894	Third green stage	57.027
	SRR8316900	Third green stage	129.209
	SRR8316901	Third green stage	123.174
	SRR8316898	Complete white stage	35.884
	SRR8316899	Complete white stage	177.545
	SRR8316903	Complete white stage	77.507
	SRR8316902	Silver flowering stage	24.507
	SRR8316904	Silver flowering stage	34.860
	SRR8316905	Silver flowering stage	16.703
	SRR8316906	Gold flowering stage	29.388
	SRR8316907	Gold flowering stage	37.675
	SRR8316908	Gold flowering stage	39.902
SRP132670	SRR6706286	Control	194.060
	SRR6706287	Light intensity 50%	148.547
	SRR6706288	Light intensity 20%	145.612
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	193.840
	CNS0095593	Slightly white alabastrum(diploid) 2	154.776
	CNS0095594	Slightly white alabastrum(diploid) 3	164.938
	CNS0095595	Whole white alabastrum(diploid) 2	180.476
	CNS0095596	Whole white alabastrum(diploid) 3	65.683
	CNS0095597	Whole white alabastrum(diploid) 4	116.263
	CNS0095598	Silvery flower (diploied) 1	508.596
	CNS0095599	Silvery flower (diploied) 2	545.209
	CNS0095600	Silvery flower (diploied) 3	148.819
	CNS0095601	Golden flower (diploid) 1	616.939
	CNS0095602	Golden flower (diploid) 2	362.653
	CNS0095603	Golden flower (diploid) 3	343.909
	CNS0095604	Slightly white alabastrum(tetraploid) 1	152.782
	CNS0095605	Slightly white alabastrum(tetraploid) 2	165.305
	CNS0095606	Slightly white alabastrum(tetraploid) 3	311.667
	CNS0095607	Whole white alabastrum(tetraploid) 1	97.026
	CNS0095608	Whole white alabastrum(tetraploid) 2	75.850
	CNS0095609	Whole white alabastrum(tetraploid) 3	97.058
	CNS0095610	Silvery flower (tetraploid) 1	105.384
	CNS0095611	Silvery flower (tetraploid) 2	182.423
	CNS0095612	Silvery flower (tetraploid) 3	59.040
	CNS0095613	Golden flower (tetraploid) 1	48.031
	CNS0095614	Golden flower (tetraploid) 2	106.970
	CNS0095615	Golden flower (tetraploid) 3	22.396
CRA001975	CRR073297	Stem 1	118.658
	CRR073298	Stem 2	98.593
	CRR073299	Stem 3	102.683
	CRR073300	Leaf 1	50.007
	CRR073301	Leaf 2	67.279
	CRR073302	Leaf 3	47.765
	CRR073303	Juvenile bud 1	50.311
	CRR073304	Juvenile bud 2	36.796
	CRR073305	Juvenile bud 3	66.929
	CRR073306	Third green 1	27.806
	CRR073307	Third green 2	23.443
	CRR073308	Third green 3	31.271
	CRR073309	Second white 1	16.839
	CRR073310	Second white 2	13.582
	CRR073311	Second white 3	8.755
	CRR073312	Silver flowering 1	9.155
	CRR073313	Silver flowering 2	12.794
	CRR073314	Silver flowering 3	8.983
	CRR073315	Gold flowering 1	183.755
	CRR073316	Gold flowering 2	222.788
	CRR073317	Gold flowering 3	216.385
	CRR073318	Tawny withering 1	67.432
	CRR073319	Tawny withering 2	52.847
	CRR073320	Tawny withering 3	63.976