Gene detail

Detail information of GWHGAAZE024588

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656596.1	6.3359E-133	PREDICTED: uncharacterized protein LOC100243222 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9ZUG9\|BH066_ARATH	1E-77	Transcription factor bHLH66
trEMBL	tr\|F6HYI3\|F6HYI3_VITVI	1E-133	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59747.1}
TAIR10	AT2G24260.1	2E-41	LJRHL1-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45655078	45659770	+
GWHAAZE00000007	mRNA	45655078	45659770	+
GWHAAZE00000007	exon	45655078	45655554	+
GWHAAZE00000007	exon	45655783	45655884	+
GWHAAZE00000007	exon	45655961	45656140	+
GWHAAZE00000007	exon	45656662	45656727	+
GWHAAZE00000007	exon	45657773	45657838	+
GWHAAZE00000007	exon	45658104	45658172	+
GWHAAZE00000007	exon	45659402	45659770	+
GWHAAZE00000007	five_prime_UTR	45655078	45655179	+
GWHAAZE00000007	CDS	45655180	45655554	+
GWHAAZE00000007	CDS	45655783	45655884	+
GWHAAZE00000007	CDS	45655961	45656140	+
GWHAAZE00000007	CDS	45656662	45656727	+
GWHAAZE00000007	CDS	45657773	45657838	+
GWHAAZE00000007	CDS	45658104	45658172	+
GWHAAZE00000007	CDS	45659402	45659770	+

Transcript Sequence
>GWHTAAZE024622 CATTCAAACCAATCATCAGTTCATCAATTCCTCTAAATCTGTGTGTATATATATCTGAAACCGTAACAGAAAAGTTTCAAGTACTACTGAACTCAAAAAATCATGAACCACCATCACCAACAACCACCTCATCACTTCAACACGACGTCGTCCGACGACGACTTTCTCGAACAAACCCTCTCTTCCTGCTCCTGGCCTGACCTCTCTACCACGTCCTCCCCCCTTCCGTGGGACCTCCGCCAGATCGCCGCCGGCGACGGCACTGCTTCGCCTTCACCGTCGCCAGCTATGTCTCTGTTGCTCCAGCAGCAGTTGTTGCTGTCCAGAGGCCACGCAGGTGGACTTTCCTCGCCGACCGTAATCTCAGGCGCCGGTGGAGATTCCGGTGTCTTGCCGATGGCTCTGAGTCTAGGTAGTAATGGAGATTGTTTTAATCGGTCTCGAAATGATAATCCCTCGTTTGACTCGCCAAATCAGGGAAATGATGCTTCAGTTCAAGCACTACTCAATGGTTTCACCGAATCACTGTACGGTTCCGATCAGATTTCCAACATAGCTCATCAATTCCACAATAATCAGGTTATATTTATTGATCGGTTACAGAGAGGAACGATGGAGACACAGAGTTTTAATACGCCAGCGGCTGTGACAAACCAATCGTCGGCTACCGGATCAGCCGGTGGCACGCCAGCGGCGACGAGGCAGAGAGTTAGGGCTCGGAGAGGACAGGCCACGGATCCACACAGCATCGCCGAAAGGTTACGGAGAGAGAGGATTGCGGAGAGGATGAAGGGCTTGCAGGAACTGGTCCCCAATGCCAATAAGACAGACAAAGCTTCAATGCTGGATGAGATCATCGACTATGTCAATTTTCTCAGGCTCCAAGTCAAAGTTCTAAGTATGAGTAGATTGGGTGGTGCTGCAGCTGTTGCTCCTCCAGTTGCTGAAATATCTTCTGAGGGAGGTGGTGAGTGTATACAAGCAAGTGGTGGAGTTGGGGCAACGAGCAATAACATTACAACAAAAACGACGCCTTCAACAAATCACAGCATAAAGGCAACAGAGCACCAGGTAGCAAAGCTAATGGAAGAGGACATGGGTTCAGCAATGCAGTACCTACAAAGCAAAGGTCTTTGCCTCATGCCCATTTCCCTTGCCACCGCCATTTCTACTGCCACCACCGGTAACCACCACCACCATCAACCACCCCATTCTCACAGCGGCACTGGGCCCTCCTCCCCCAATTTGTCTGTCTTGACCGGCCAGTCTGCCACCGTTGGTAACGGCATTGCCCAAACCAAAGATTCCACATCCGTTTCCAAACCCTGA

Network for GWHGAAZE024588

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	214	258	5.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.357
	SRR3591706	second leaf	21.767
	SRR3591707	mature leaf	22.529
	SRR3591708	Shoot apex	13.540
	SRR3591709	Stem	25.603
	SRR3591710	White floral bud	45.845
	SRR3591711	White flower	22.700
	SRR3591712	Green floral bud	45.464
	SRR3591713	Yellow flower	26.828
SRP173429	SRR8316895	Juvenile bud stage	21.381
	SRR8316896	Juvenile bud stage	33.756
	SRR8316897	Juvenile bud stage	17.095
	SRR8316894	Third green stage	9.146
	SRR8316900	Third green stage	27.349
	SRR8316901	Third green stage	28.294
	SRR8316898	Complete white stage	10.074
	SRR8316899	Complete white stage	36.393
	SRR8316903	Complete white stage	19.962
	SRR8316902	Silver flowering stage	4.799
	SRR8316904	Silver flowering stage	8.475
	SRR8316905	Silver flowering stage	2.516
	SRR8316906	Gold flowering stage	12.930
	SRR8316907	Gold flowering stage	14.692
	SRR8316908	Gold flowering stage	35.619
SRP132670	SRR6706286	Control	41.242
	SRR6706287	Light intensity 50%	38.965
	SRR6706288	Light intensity 20%	38.196
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.578
	CNS0095593	Slightly white alabastrum(diploid) 2	20.949
	CNS0095594	Slightly white alabastrum(diploid) 3	25.918
	CNS0095595	Whole white alabastrum(diploid) 2	18.321
	CNS0095596	Whole white alabastrum(diploid) 3	13.765
	CNS0095597	Whole white alabastrum(diploid) 4	19.525
	CNS0095598	Silvery flower (diploied) 1	19.511
	CNS0095599	Silvery flower (diploied) 2	16.177
	CNS0095600	Silvery flower (diploied) 3	17.476
	CNS0095601	Golden flower (diploid) 1	15.719
	CNS0095602	Golden flower (diploid) 2	27.310
	CNS0095603	Golden flower (diploid) 3	26.622
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.165
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.404
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.959
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.539
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.357
	CNS0095610	Silvery flower (tetraploid) 1	11.451
	CNS0095611	Silvery flower (tetraploid) 2	9.178
	CNS0095612	Silvery flower (tetraploid) 3	11.771
	CNS0095613	Golden flower (tetraploid) 1	16.339
	CNS0095614	Golden flower (tetraploid) 2	26.781
	CNS0095615	Golden flower (tetraploid) 3	14.390
CRA001975	CRR073297	Stem 1	35.441
	CRR073298	Stem 2	33.819
	CRR073299	Stem 3	26.893
	CRR073300	Leaf 1	31.258
	CRR073301	Leaf 2	36.238
	CRR073302	Leaf 3	29.203
	CRR073303	Juvenile bud 1	26.569
	CRR073304	Juvenile bud 2	29.536
	CRR073305	Juvenile bud 3	33.250
	CRR073306	Third green 1	15.806
	CRR073307	Third green 2	17.624
	CRR073308	Third green 3	20.288
	CRR073309	Second white 1	15.460
	CRR073310	Second white 2	8.716
	CRR073311	Second white 3	11.570
	CRR073312	Silver flowering 1	26.582
	CRR073313	Silver flowering 2	34.980
	CRR073314	Silver flowering 3	30.918
	CRR073315	Gold flowering 1	6.968
	CRR073316	Gold flowering 2	12.475
	CRR073317	Gold flowering 3	12.754
	CRR073318	Tawny withering 1	37.548
	CRR073319	Tawny withering 2	32.379
	CRR073320	Tawny withering 3	30.537