Gene detail

Detail information of GWHGAAZE024599

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004242591.1	1.0018E-159	PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Solanum lycopersicum]
COG	YP_008734911.1	3E-37	1-acyl-sn-glycerol-3-phosphate acyltransferase
Swissprot	tr\|Q9LLY4\|LPAT1_BRANA	8E-120	1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic (Precursor)
trEMBL	tr\|K4CB29\|K4CB29_SOLLC	4E-160	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc07g005580.2.1}
TAIR10	AT4G30580.1	4E-96	Phospholipid/glycerol acyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45886106	45894727	+
GWHAAZE00000007	mRNA	45886106	45894727	+
GWHAAZE00000007	exon	45886106	45886386	+
GWHAAZE00000007	exon	45888656	45888823	+
GWHAAZE00000007	exon	45888951	45888994	+
GWHAAZE00000007	exon	45889949	45890021	+
GWHAAZE00000007	exon	45890924	45891115	+
GWHAAZE00000007	exon	45891389	45891795	+
GWHAAZE00000007	exon	45892258	45892359	+
GWHAAZE00000007	exon	45894512	45894727	+
GWHAAZE00000007	five_prime_UTR	45886106	45886386	+
GWHAAZE00000007	five_prime_UTR	45888656	45888753	+
GWHAAZE00000007	CDS	45888754	45888823	+
GWHAAZE00000007	CDS	45888951	45888994	+
GWHAAZE00000007	CDS	45889949	45890021	+
GWHAAZE00000007	CDS	45890924	45891115	+
GWHAAZE00000007	CDS	45891389	45891795	+
GWHAAZE00000007	CDS	45892258	45892359	+
GWHAAZE00000007	CDS	45894512	45894727	+

Transcript Sequence
>GWHTAAZE024633 AATCAAGAAATTACAGAGTTCATACAAAATTTGCAGCAAACGTATGAATGACATACATCAAACAAGTGCCAAAATTGAGAAAATTGGTAACTTTGAAGTAGTACAATGTTTAATTTGGTGGGGCTATCCAAAATTGAGAAAATAAAAGAAAATTTCAGTGCCAACAACCCCCCTTTGTCGCTCTCACTCACATTTGCCTGCACCTCGACCTATCACTGCTCTACGACCGGTTAGGGTTTTGCTTTTGCAATTGGAGCTTTATACGCCATTGATACTGGCAAGAAGTTATTGCTTGAAGCCTAAGAAGAAGCAAGAGTAACATTCTGCGTGGTGTGTGTGTTTGAAATAAATTGATTAAGCTTTGCCTGGTGTTCGTTTCATGGAAGTATCTTATCGCCCAACATTCAACCATTGCCTCTTTCTCCCATCCACTCCACTCAATCAACTCTGTAGGAAAAGAGGAAGGTTTTACTCTTCATTACCTCTTCAGCCTTTGTGTGCCCATAAAGGAGTTTATGTTGGGTGCTCTCCTTTCAACAAGTCGATTTGGAGAAATGTAATGAATTATGATCTTGCAGACGGCAATTTATTTGGTACAAACAGAAATGGATGTGCCTGTTGTTGCTCTTTTGACCCAAAAGGGAACATTTCTAGACTGCATTATAAATGGCATAACCGAGATAAATTGTTAAGGCATGTGGCTGTCAGATCTGAAGTTGCTGGAACTGGGTCCCCCAACACTGCCTATCAATTATCAGATCTTGAATTGGAATCAAAAGTTAGAGGATTTTGCTTTTACGCTGTTACTTCTTGTACTGCTATTTTCTTATTTGTGGGGATGCTGGTTGCACATCCTTTTGTGCTCTTATTTGATCGGTACCGTCGAAAAGCTCATCATCTCATCGCCAAAATTTGGGCACTTTTGACAATTAGTCCATTTGTTAAGGTTGAGTTTGAGGGATTAGAAAATCTTCCCCCACCAGATTCTCCTGCTGTATATGTATCCAATCACCAGAGCTTTTTAGACACATATACTCTTCTAACTCTTGGGAGAAGCTTCAAGTTCATTAGCAAGACTGCAATTTTCCTCTTTCCTGTTGTTGGGTGGGCCATGTTTTTAATGGGTCTTATTCCTTTGAAGCGAATGGACAGCAGAAGCCAATTGCAAACTCTCAAGCGATGCATGGATCTTGTCAAAAAGGGAGGATCTGTTTTCTTCTTTCCAGAGGGTACCCGGAGTAAAGATGGAAAATTAGGGGCTTTCAAGAAAGGTGCATTTAGTATTGCTGCAAAAACCGGAGTACCAGTTGTCCCAATCAGTCTTATCGGTACTGGCAAAATCATGCCTGTAGGAAGGGAGAGCAGATTATATCCGGGATCTGTTAAAGTTGTCATTCACCCTTCTATAGAAGGAAATAATGCAGAAGTACTTTGCAGTGAGACCCGTGATATAATTGCCAACACGCTCTTTCATCAAGGCTAA

Network for GWHGAAZE024599

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01553.22	Acyltransferase	189	314	9.40E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00655	plsC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0008654	biological_process	phospholipid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016746	molecular_function	transferase activity, transferring acyl groups
GO:0003841	molecular_function	1-acylglycerol-3-phosphate O-acyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.404
	SRR3591706	second leaf	15.232
	SRR3591707	mature leaf	16.027
	SRR3591708	Shoot apex	12.840
	SRR3591709	Stem	12.609
	SRR3591710	White floral bud	10.457
	SRR3591711	White flower	13.587
	SRR3591712	Green floral bud	10.679
	SRR3591713	Yellow flower	13.481
SRP173429	SRR8316895	Juvenile bud stage	7.931
	SRR8316896	Juvenile bud stage	10.586
	SRR8316897	Juvenile bud stage	5.751
	SRR8316894	Third green stage	4.609
	SRR8316900	Third green stage	13.874
	SRR8316901	Third green stage	13.110
	SRR8316898	Complete white stage	5.821
	SRR8316899	Complete white stage	17.850
	SRR8316903	Complete white stage	8.814
	SRR8316902	Silver flowering stage	11.258
	SRR8316904	Silver flowering stage	17.863
	SRR8316905	Silver flowering stage	7.716
	SRR8316906	Gold flowering stage	30.302
	SRR8316907	Gold flowering stage	27.815
	SRR8316908	Gold flowering stage	27.388
SRP132670	SRR6706286	Control	6.557
	SRR6706287	Light intensity 50%	6.899
	SRR6706288	Light intensity 20%	7.688
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.253
	CNS0095593	Slightly white alabastrum(diploid) 2	8.251
	CNS0095594	Slightly white alabastrum(diploid) 3	6.810
	CNS0095595	Whole white alabastrum(diploid) 2	7.437
	CNS0095596	Whole white alabastrum(diploid) 3	6.252
	CNS0095597	Whole white alabastrum(diploid) 4	7.198
	CNS0095598	Silvery flower (diploied) 1	9.178
	CNS0095599	Silvery flower (diploied) 2	9.119
	CNS0095600	Silvery flower (diploied) 3	14.624
	CNS0095601	Golden flower (diploid) 1	10.764
	CNS0095602	Golden flower (diploid) 2	12.049
	CNS0095603	Golden flower (diploid) 3	12.124
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.934
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.846
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.465
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.724
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.973
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.511
	CNS0095610	Silvery flower (tetraploid) 1	15.119
	CNS0095611	Silvery flower (tetraploid) 2	14.798
	CNS0095612	Silvery flower (tetraploid) 3	13.366
	CNS0095613	Golden flower (tetraploid) 1	9.754
	CNS0095614	Golden flower (tetraploid) 2	14.531
	CNS0095615	Golden flower (tetraploid) 3	15.004
CRA001975	CRR073297	Stem 1	6.124
	CRR073298	Stem 2	5.421
	CRR073299	Stem 3	4.127
	CRR073300	Leaf 1	3.964
	CRR073301	Leaf 2	2.948
	CRR073302	Leaf 3	3.580
	CRR073303	Juvenile bud 1	4.410
	CRR073304	Juvenile bud 2	3.710
	CRR073305	Juvenile bud 3	3.467
	CRR073306	Third green 1	3.693
	CRR073307	Third green 2	1.765
	CRR073308	Third green 3	2.774
	CRR073309	Second white 1	5.755
	CRR073310	Second white 2	6.374
	CRR073311	Second white 3	6.555
	CRR073312	Silver flowering 1	6.188
	CRR073313	Silver flowering 2	4.494
	CRR073314	Silver flowering 3	6.095
	CRR073315	Gold flowering 1	1.820
	CRR073316	Gold flowering 2	3.976
	CRR073317	Gold flowering 3	1.500
	CRR073318	Tawny withering 1	2.133
	CRR073319	Tawny withering 2	3.136
	CRR073320	Tawny withering 3	3.259