Gene detail

Detail information of GWHGAAZE024600

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU34343.1	0	hypothetical protein MIMGU_mgv1a001946mg [Erythranthe guttata]
COG	YP_005071944.1	1E-27	cyclic nucleotide-binding protein
Swissprot	tr\|Q8RWS9\|CNGC5_ARATH	0	Probable cyclic nucleotide-gated ion channel 5
trEMBL	tr\|A0A022R415\|A0A022R415_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU34343.1}
TAIR10	AT5G57940.2	0	cyclic nucleotide gated channel 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	45909134	45917690	+
GWHAAZE00000007	mRNA	45909134	45917690	+
GWHAAZE00000007	exon	45909134	45909192	+
GWHAAZE00000007	exon	45910506	45911091	+
GWHAAZE00000007	exon	45912030	45912242	+
GWHAAZE00000007	exon	45913353	45913618	+
GWHAAZE00000007	exon	45914553	45914664	+
GWHAAZE00000007	exon	45915667	45915903	+
GWHAAZE00000007	exon	45916978	45917690	+
GWHAAZE00000007	CDS	45909134	45909192	+
GWHAAZE00000007	CDS	45910506	45911091	+
GWHAAZE00000007	CDS	45912030	45912242	+
GWHAAZE00000007	CDS	45913353	45913618	+
GWHAAZE00000007	CDS	45914553	45914664	+
GWHAAZE00000007	CDS	45915667	45915903	+
GWHAAZE00000007	CDS	45916978	45917670	+
GWHAAZE00000007	three_prime_UTR	45917671	45917690	+

Transcript Sequence
>GWHTAAZE024634 ATGTTTGATTGTGGTTCCAAGTCCCAATATATGGGTGGTCAGCAAGAGAAGTTCTTAAGGTTGGACGACGTGGACTCTAGGTTATCATCTCCTGCTGCCTCAGTTGCAGCAAGCAAATGTGGTTTCAACATCGAGGGTTTAAATCGTGGTATTCATCCATCTAACACCACATCTAGATCTTTTAAGAAAGGAATGAAGAAAGGATCTGAAGGACTTAAGTCAATCGGCAGATCACTCGGATTCGGAGTTTCTCAAGCTGTTTTTCCCGAAGATCTTAAAGTGTCGGAAAGGAAAATATTTGACCCACAAGATAAATTCCTTCAATTATGGAACAAATTTTTTGTAGTATCATGTATTGTGGCAATATCTGTGGACCCACTGTTCTTCTATCTTCCTGTTTTCGATCAATCAAGACATTGTCTAGGGATAGATCGAAAGCTAGCGATCACAGCTACAACGCTTCGTACACTTATTGATGCTTTCTATCTTATTCACATGGCTCTTCAATTCCGAACGGCTTATGTTGCACCATCTTCTAGGGTTTTTGGAAGAGGTGAACTTGTGATCGATCCTGCACAAATTGCTAAACGATACTTGAGGTGGTATTTTATCCTTGATTTTCTTGCTGTGCTGCCCCTACCGCAGATTGTGATCTGGAGATTTCTGCTCCGATCAAAAGGTTCAGATGTATTGGCTACAAAACAAGCATTGCTGTTCATTATATTTCTTCAATACATACCCAGATTTCTCAGAATATTGCCCTTAACTTCGGAACTGAAAAGGACAGCAGGTGTCTTTGCTGAAACTGCATGGGCTGGAGCTGTTTACTATTTGCTGCTATACATGCTTGCCAGTCATATAGTTGGGGCATTCTGGTACTTACTATCAATAGAACGTATCGATACATGCTGGTCGAAAGCTTGTAAAGACAGTGGAAACTGCAGCACAAATTACTTATATTGTGGCAACCAGAACATGAACAATGATGCTAGTTGGAGTAACATCAGTGATTCGGTTCTAAATTCAATTTGCTCTGGAGATGATGATAATCCAAATTTTGACTTTGGAATATTTCAGCAGGCTTTGTCATCTGAAATTGTTTCATCCAAGAAGTTACTTTCTAATACACTTGGCCAGGGACTTCAAACCAGCACCTATCCAGGAGAATCATTATTTTCAATTGCATTAGCCATATTAGGACTCATTCTATTTGCCTTATTGATTGGAAACATGCAGACATACCTACAATCTCTTACTATTCGTCTTGAAGAAATGAGAGTTAAAAGGCGAGACTCAGAGCAGTGGATGCATCACCGTTTGCTCCCACAAGATCTTAGGGAGCGGGTTAGGCGTTATGATCAGTACAAGTGGTTGGAAACACGGGGAGTCGATGAAGAGAATTTGGTTCAGAATCTACCCAAGGATCTCAGAAGGGACATTAAGCGTCATCTTTGTCTTGCTTTGGTCAAGAGGGTGCCACTATTTGAGAACATGGACGAGAGGTTGCTCGATGCCATTTGTGAGCGGCTAAAGCCGTGTTTATACACGGAGAACAGTTACATAGTCAGAGAAGGAGATCCGGTCGACGAGATGCTCTTCATAATACGCGGCCACCTCGAGAGTGTAACCACTGACGGTGGCCGGAGTGGCTTTTTCAACTTCAGTGTTCTCAAAGAAGGCGATTTTTGTGGTGAGGAGCTGCTAACGTGGGCCCTTGACCCCAAATCCGGCGCTAACTTGCCCTCCTCTACTCGCACTGGCAAGGCCTTAACGGAAGTCGAGGCTTTTGCCCTCACTGCAGATGAATTAAAATTCGTTGCTGGTCAATTCCGGCGACTCCATAGCCGGCAAGTTCAACACACTTTCCGTTTCTACTCGCAGCAATGGAGGACTTGGGCCGCTTGCTTTATCCAAGCAGCATGGCGGCGGTACTCTAAACGGAAAATCTTGGAGCTCCGACGGAAGGAGGAGGAGGAGGAAGCATTGGCTGGAGCTAGGAGTAGTTCCGGTGAGGGTTCATATAGTATTGGTGCTACCTTCTTAGCTTCAAGATTTGCGGCGAATGCACTTCGTGGAGTCCACCGGAATCGGAATCTCAAGACGGCTAGGGAATTGGTGAAACTTCAAAAGCCGCCGGAGCCAGATTTCACTGTCGATACTGATTGATTTGTGCGTTTGGCAACCGA

Network for GWHGAAZE024600

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	108	420	2.20E-30
PF00027.30	cNMP_binding	515	604	3.40E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006813	biological_process	potassium ion transport
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005249	molecular_function	voltage-gated potassium channel activity
GO:0005515	molecular_function	protein binding
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.187
	SRR3591706	second leaf	24.833
	SRR3591707	mature leaf	33.155
	SRR3591708	Shoot apex	29.208
	SRR3591709	Stem	47.626
	SRR3591710	White floral bud	34.100
	SRR3591711	White flower	40.352
	SRR3591712	Green floral bud	33.643
	SRR3591713	Yellow flower	33.332
SRP173429	SRR8316895	Juvenile bud stage	12.404
	SRR8316896	Juvenile bud stage	17.720
	SRR8316897	Juvenile bud stage	8.487
	SRR8316894	Third green stage	8.824
	SRR8316900	Third green stage	23.333
	SRR8316901	Third green stage	22.656
	SRR8316898	Complete white stage	15.389
	SRR8316899	Complete white stage	46.507
	SRR8316903	Complete white stage	22.857
	SRR8316902	Silver flowering stage	16.133
	SRR8316904	Silver flowering stage	23.222
	SRR8316905	Silver flowering stage	12.077
	SRR8316906	Gold flowering stage	42.995
	SRR8316907	Gold flowering stage	32.372
	SRR8316908	Gold flowering stage	40.926
SRP132670	SRR6706286	Control	25.462
	SRR6706287	Light intensity 50%	22.994
	SRR6706288	Light intensity 20%	25.129
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.894
	CNS0095593	Slightly white alabastrum(diploid) 2	16.461
	CNS0095594	Slightly white alabastrum(diploid) 3	11.837
	CNS0095595	Whole white alabastrum(diploid) 2	13.108
	CNS0095596	Whole white alabastrum(diploid) 3	10.482
	CNS0095597	Whole white alabastrum(diploid) 4	13.730
	CNS0095598	Silvery flower (diploied) 1	21.947
	CNS0095599	Silvery flower (diploied) 2	21.854
	CNS0095600	Silvery flower (diploied) 3	44.231
	CNS0095601	Golden flower (diploid) 1	23.005
	CNS0095602	Golden flower (diploid) 2	51.284
	CNS0095603	Golden flower (diploid) 3	46.713
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.468
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.741
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.866
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.223
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.258
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.731
	CNS0095610	Silvery flower (tetraploid) 1	36.978
	CNS0095611	Silvery flower (tetraploid) 2	40.270
	CNS0095612	Silvery flower (tetraploid) 3	32.082
	CNS0095613	Golden flower (tetraploid) 1	23.577
	CNS0095614	Golden flower (tetraploid) 2	36.336
	CNS0095615	Golden flower (tetraploid) 3	55.714
CRA001975	CRR073297	Stem 1	20.961
	CRR073298	Stem 2	17.532
	CRR073299	Stem 3	20.692
	CRR073300	Leaf 1	24.811
	CRR073301	Leaf 2	21.136
	CRR073302	Leaf 3	19.053
	CRR073303	Juvenile bud 1	23.125
	CRR073304	Juvenile bud 2	22.711
	CRR073305	Juvenile bud 3	28.540
	CRR073306	Third green 1	15.969
	CRR073307	Third green 2	15.234
	CRR073308	Third green 3	16.651
	CRR073309	Second white 1	20.078
	CRR073310	Second white 2	21.923
	CRR073311	Second white 3	18.023
	CRR073312	Silver flowering 1	21.528
	CRR073313	Silver flowering 2	25.263
	CRR073314	Silver flowering 3	20.930
	CRR073315	Gold flowering 1	19.752
	CRR073316	Gold flowering 2	29.651
	CRR073317	Gold flowering 3	23.295
	CRR073318	Tawny withering 1	28.104
	CRR073319	Tawny withering 2	27.357
	CRR073320	Tawny withering 3	28.431