Detail information of GWHGAAZE024610


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN70546.10hypothetical protein VITISV_013807 [Vitis vinifera]
Swissprottr|Q03387|IF4G1_WHEAT0Eukaryotic translation initiation factor isoform 4G-1
trEMBLtr|A5BU43|A5BU43_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN70546.1}
TAIR10AT5G57870.20MIF4G domain-containing protein / MA3 domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4613372046139687-
GWHAAZE00000007mRNA4613372046139687-
GWHAAZE00000007exon4613372046134721-
GWHAAZE00000007exon4613520846135450-
GWHAAZE00000007exon4613596846136372-
GWHAAZE00000007exon4613647646136563-
GWHAAZE00000007exon4613705046137147-
GWHAAZE00000007exon4613741746137530-
GWHAAZE00000007exon4613907346139288-
GWHAAZE00000007exon4613942446139519-
GWHAAZE00000007exon4613968546139687-
GWHAAZE00000007CDS4613968546139687-
GWHAAZE00000007CDS4613942446139519-
GWHAAZE00000007CDS4613907346139288-
GWHAAZE00000007CDS4613741746137530-
GWHAAZE00000007CDS4613705046137147-
GWHAAZE00000007CDS4613647646136563-
GWHAAZE00000007CDS4613596846136372-
GWHAAZE00000007CDS4613520846135450-
GWHAAZE00000007CDS4613372046134721-
Transcript Sequence

Network for GWHGAAZE024610

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02854.20MIF4G1714143.20E-53
PF02847.18MA35907021.40E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03260EIF4G RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.262
SRR3591706second leaf15.586
SRR3591707mature leaf14.278
SRR3591708Shoot apex22.777
SRR3591709Stem34.027
SRR3591710White floral bud23.849
SRR3591711White flower32.257
SRR3591712Green floral bud35.359
SRR3591713Yellow flower24.136
SRP173429 SRR8316895Juvenile bud stage 23.103
SRR8316896Juvenile bud stage 30.825
SRR8316897Juvenile bud stage 12.278
SRR8316894Third green stage 11.696
SRR8316900Third green stage 41.362
SRR8316901Third green stage 43.420
SRR8316898Complete white stage 12.366
SRR8316899Complete white stage 42.181
SRR8316903Complete white stage 20.390
SRR8316902Silver flowering stage15.738
SRR8316904Silver flowering stage17.090
SRR8316905Silver flowering stage6.993
SRR8316906Gold flowering stage 30.240
SRR8316907Gold flowering stage 33.195
SRR8316908Gold flowering stage 39.108
SRP132670SRR6706286Control36.189
SRR6706287Light intensity 50%36.238
SRR6706288Light intensity 20%39.330
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.226
CNS0095593Slightly white alabastrum(diploid) 221.851
CNS0095594Slightly white alabastrum(diploid) 321.787
CNS0095595Whole white alabastrum(diploid) 219.095
CNS0095596Whole white alabastrum(diploid) 317.206
CNS0095597Whole white alabastrum(diploid) 419.271
CNS0095598Silvery flower (diploied) 121.778
CNS0095599Silvery flower (diploied) 217.210
CNS0095600Silvery flower (diploied) 326.336
CNS0095601Golden flower (diploid) 116.689
CNS0095602Golden flower (diploid) 224.071
CNS0095603Golden flower (diploid) 323.060
CNS0095604Slightly white alabastrum(tetraploid) 124.822
CNS0095605Slightly white alabastrum(tetraploid) 219.386
CNS0095606Slightly white alabastrum(tetraploid) 340.666
CNS0095607Whole white alabastrum(tetraploid) 117.890
CNS0095608Whole white alabastrum(tetraploid) 217.534
CNS0095609Whole white alabastrum(tetraploid) 335.540
CNS0095610Silvery flower (tetraploid) 131.794
CNS0095611Silvery flower (tetraploid) 221.175
CNS0095612Silvery flower (tetraploid) 323.338
CNS0095613Golden flower (tetraploid) 119.158
CNS0095614Golden flower (tetraploid) 232.991
CNS0095615Golden flower (tetraploid) 320.497
CRA001975CRR073297Stem 147.895
CRR073298Stem 242.225
CRR073299Stem 339.903
CRR073300Leaf 147.133
CRR073301Leaf 244.243
CRR073302Leaf 336.320
CRR073303Juvenile bud 138.606
CRR073304Juvenile bud 224.048
CRR073305Juvenile bud 347.516
CRR073306Third green 126.508
CRR073307Third green 214.971
CRR073308Third green 320.785
CRR073309Second white 128.818
CRR073310Second white 227.890
CRR073311Second white 331.622
CRR073312Silver flowering 141.784
CRR073313Silver flowering 245.175
CRR073314Silver flowering 336.371
CRR073315Gold flowering 18.749
CRR073316Gold flowering 211.425
CRR073317Gold flowering 311.065
CRR073318Tawny withering 124.812
CRR073319Tawny withering 222.370
CRR073320Tawny withering 326.813