Gene detail

Detail information of GWHGAAZE024612

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007203774.1	hypothetical protein PRUPE_ppa002595mg [Prunus persica]
COG	YP_165316.1	chaperone protein DnaK
Swissprot	tr\|P26413\|HSP70_SOYBN	Heat shock 70 kDa protein
trEMBL	tr\|M5W6U5\|M5W6U5_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ04973.1}
TAIR10	AT1G16030.1	heat shock protein 70B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	46180866	46200479	+
GWHAAZE00000007	mRNA	46180866	46200479	+
GWHAAZE00000007	exon	46180866	46181048	+
GWHAAZE00000007	exon	46181810	46182251	+
GWHAAZE00000007	exon	46182676	46183897	+
GWHAAZE00000007	exon	46187881	46187997	+
GWHAAZE00000007	exon	46188999	46189038	+
GWHAAZE00000007	exon	46189137	46189196	+
GWHAAZE00000007	exon	46196316	46196368	+
GWHAAZE00000007	exon	46198549	46198621	+
GWHAAZE00000007	exon	46198725	46198817	+
GWHAAZE00000007	exon	46200321	46200479	+
GWHAAZE00000007	CDS	46180866	46181048	+
GWHAAZE00000007	CDS	46181810	46182251	+
GWHAAZE00000007	CDS	46182676	46183897	+
GWHAAZE00000007	CDS	46187881	46187997	+
GWHAAZE00000007	CDS	46188999	46189038	+
GWHAAZE00000007	CDS	46189137	46189196	+
GWHAAZE00000007	CDS	46196316	46196368	+
GWHAAZE00000007	CDS	46198549	46198621	+
GWHAAZE00000007	CDS	46198725	46198817	+
GWHAAZE00000007	CDS	46200321	46200479	+

Transcript Sequence
>GWHTAAZE024646 ATGGCTACTGCAAAAGAAGGCAAAGCGATCGGGATTGATCTCGGCACCACTTACAGCTGCGTCGGCGTTTGGCTGAACGATCGCGTCGAGATCATCCCCAATGACCAGGGCAACCGTACGACGCCGTCCTACGTTGCGTTCACCGATACCGAGCGGCTCATAGGTGACGCTGCCAAGAACCAGGTGGCGATGAACCCGCAAAACACCGTGTTCGATGCCAAGCGCCTGATTGGACGGAGATTTTCGGATCCGTCGGTCCAAAACGACATGAAGCTCTGGCCGTTCAAGGTGATCCCTGGCCATGGGGACAAGCCGATGATTGTTGTCACCTACAAAGGTGAACAGAAACAGTTTGCCCCCGAGGAGATATCATCCATGGTGCTTGTGAAAATGAGGGAAGTTGCCGAGGCTTTTCTGGGTCAGAGCATCAACAATGCTGTCGTTACTGTTCCCGCGTATTTCAATGACTCGCAGCGGCAAGCCACCAAGGATGCCGGTGTGATTGCCGGCCTGAATGTCATGCGGATCATCAACGAGCCGACAGCTGCAGCTATTGCATATGGGCTTGATAAGAAAGCGTCTCGAAAAGGGGAGCAGAATGTGCTGATTTTCGACCTTGGCGGAGGTACTTTTGATGTTTCTTTGCTGACAATTGAAGAGGGCATTTTCGAGGTGAAAGCCACTGCTGGAGACACCCACTTGGGTGGGGAAGATTTCGATAACCGTTTGGTCAACCACTTTGCTGCGGAGTTTAGAAGAAAGCACAAAAAGGACATTAGCGGCAACGCTAGAGCCTTAAGGAGACTAAGGACTGCTTGCGAGAGAGCCAAGCGGACTTTATCGTCTACTACACAGACGACCATAGAAATCGATTCTTTGTACGAGGGAATTGATTTCTATGCTACAATTACTCGTGCTAGGTTCGAGGAACTTAACTTGGATTTGTTTAGGAGATGTATGGAACCCGTGGAGAAATGTTTACGTGATGCGAAGATTGATAAATCTCAAGTTCATGAGGTTGTACTTGTCGGTGGGTCCACTAGGATTCCGAAAGTACAACAGCTTTTGCAGGATTTCTTTAATGGGAAAGAGCTTTGTAAGAGCATAAACCCCGACGAGGCGGTGGCTTATGGGGCAGCGGTACAAGCGGCAATTCTCACCGGAGAAGGCAACGAAAAGGTACAAGACCTATTGCTACTAGATGTGACACCATTGAGCCTTGGGCTTGAAACTGCCGGTGGGGTAATGACTACACTAATTCCAAGAAACACTACGATTCCAACTAAAAAGGAGCAAATCTTCTCTACCTACTCCGATAATCAGCCCGGTGTTCTGATCCAAGTGTACGAAGGCGAACGAGCAAGAACGAAAGATAACAATCTTCTGGGAAAATTCGAGCTCACTGGTATCCCCCCGGCTCCTCGTGGTGTCCCGCAGATCAATGTCACGTTTGATATTGATGCAAATGGGATTTTGAATGTGTCTGCTGAGGATAAAACTGCGGGTGTAAAGAACAAGATTACAATTACGAACGATAAGGGAAGATTGAGCAAAGAAGATATCGAGAAAATGGTGAAGGAAGCGGAGCAGTACAAGGCCGAGGATGAGGAGGTGAAGAAGAAGGTGGAAGCAAAGAATGCGCTGGAGAATTATGCGTATAATATGAGGAACACGGTGAGAGACGAGAAATTTGGGTCTAAATTGGGTCCGGATGATAAGCAGAAGATCGAGAAGGCAGTTGAGGAGGCTATCGAATGGCTGGAGAAGAATCAGTTGGCGGAAGTGGACGAGTTGGAAGATAAATTGAAGGAATTGGAGGGATTGTGCAATCCGATTATCTCAAAGATTCTTGTACTCTCCGTACCCCGCCCCTACATCGCCGCCCGTTATGGCGGAGAAGGATTTTCCCGGTCGGAGCCGAGCGACTCCTATGACGATCAAGATCTCGATATGTCCATCATCGGGTCTGAAAATGTCAGGCTCATTGATGAGAAGCAAAATATGGTTGGAATAGTTTCTAAAAGTGTGGCAGTTCAAATGGCTGAAGATGTTGAACTTGACTTGGTAATTGTATCCCCGGATGCAGATCCTCCAGTTGTCAAAATAATGGATTACAATTATAATATTGACATACACGACTACTCTGTGCGTTTGAAAGCTGCTAAGAAATTCTTGAAAGATGGTGACAAGGTTAAAGTAATAGTGAACTTGAAAGGCCGCGAAAACGAATTCAGGAACACTGCCATCGAGCTCCTCAAGCGTTTTCAGAATGACATCGGGGAGCTTGCAGTGGAGGAAAGCAAAAACTTTAGAGACAGAAACATCAACTTAGTTTTGGCTCCAAATAAGGTTGCTATACAAAAATTTCAAGAATTGCCGAAGAAAAAGGAAAATTCTACAGCCGCTGATCTAGTTTCTAAATACGGCCGCAAAACTGCGTGA

Network for GWHGAAZE024612

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00012.21	HSP70	9	616	2.50E-261
PF05198.17	IF3_N	654	706	5.30E-17
PF00707.23	IF3_C	704	782	2.40E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03283	HSPA1s	Spliceosome	map03040
		Protein processing in endoplasmic reticulum	map04141
		MAPK signaling pathway	map04010
		Endocytosis	map04144
		Antigen processing and presentation	map04612
		Estrogen signaling pathway	map04915
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0006413	biological_process	translational initiation
GO:0003743	molecular_function	translation initiation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.428
	SRR3591706	second leaf	4.281
	SRR3591707	mature leaf	9.732
	SRR3591708	Shoot apex	6.551
	SRR3591709	Stem	9.387
	SRR3591710	White floral bud	6.529
	SRR3591711	White flower	8.054
	SRR3591712	Green floral bud	2.989
	SRR3591713	Yellow flower	8.439
SRP173429	SRR8316895	Juvenile bud stage	5.471
	SRR8316896	Juvenile bud stage	30.728
	SRR8316897	Juvenile bud stage	6.999
	SRR8316894	Third green stage	1.767
	SRR8316900	Third green stage	5.977
	SRR8316901	Third green stage	4.736
	SRR8316898	Complete white stage	3.984
	SRR8316899	Complete white stage	10.107
	SRR8316903	Complete white stage	7.118
	SRR8316902	Silver flowering stage	3.632
	SRR8316904	Silver flowering stage	5.082
	SRR8316905	Silver flowering stage	2.466
	SRR8316906	Gold flowering stage	8.493
	SRR8316907	Gold flowering stage	8.442
	SRR8316908	Gold flowering stage	7.559
SRP132670	SRR6706286	Control	11.669
	SRR6706287	Light intensity 50%	8.783
	SRR6706288	Light intensity 20%	8.594
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.819
	CNS0095593	Slightly white alabastrum(diploid) 2	5.928
	CNS0095594	Slightly white alabastrum(diploid) 3	8.540
	CNS0095595	Whole white alabastrum(diploid) 2	7.079
	CNS0095596	Whole white alabastrum(diploid) 3	7.371
	CNS0095597	Whole white alabastrum(diploid) 4	10.044
	CNS0095598	Silvery flower (diploied) 1	15.543
	CNS0095599	Silvery flower (diploied) 2	84.463
	CNS0095600	Silvery flower (diploied) 3	57.869
	CNS0095601	Golden flower (diploid) 1	220.700
	CNS0095602	Golden flower (diploid) 2	65.935
	CNS0095603	Golden flower (diploid) 3	64.891
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.035
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.017
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.785
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.219
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.120
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.609
	CNS0095610	Silvery flower (tetraploid) 1	17.948
	CNS0095611	Silvery flower (tetraploid) 2	24.273
	CNS0095612	Silvery flower (tetraploid) 3	19.080
	CNS0095613	Golden flower (tetraploid) 1	12.906
	CNS0095614	Golden flower (tetraploid) 2	12.816
	CNS0095615	Golden flower (tetraploid) 3	12.884
CRA001975	CRR073297	Stem 1	5.873
	CRR073298	Stem 2	5.302
	CRR073299	Stem 3	4.580
	CRR073300	Leaf 1	6.485
	CRR073301	Leaf 2	5.623
	CRR073302	Leaf 3	5.323
	CRR073303	Juvenile bud 1	6.638
	CRR073304	Juvenile bud 2	4.306
	CRR073305	Juvenile bud 3	7.657
	CRR073306	Third green 1	7.084
	CRR073307	Third green 2	7.811
	CRR073308	Third green 3	7.156
	CRR073309	Second white 1	5.195
	CRR073310	Second white 2	10.984
	CRR073311	Second white 3	7.795
	CRR073312	Silver flowering 1	4.074
	CRR073313	Silver flowering 2	1.620
	CRR073314	Silver flowering 3	3.150
	CRR073315	Gold flowering 1	9.337
	CRR073316	Gold flowering 2	14.315
	CRR073317	Gold flowering 3	7.037
	CRR073318	Tawny withering 1	12.241
	CRR073319	Tawny withering 2	6.978
	CRR073320	Tawny withering 3	12.761