Gene detail

Detail information of GWHGAAZE024616

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274695.1	1.6691E-133	PREDICTED: spermidine hydroxycinnamoyl transferase-like [Vitis vinifera]
Swissprot	tr\|O64470\|SHT_ARATH	6E-104	Spermidine hydroxycinnamoyl transferase
trEMBL	tr\|F6HYK9\|F6HYK9_VITVI	1E-132	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59773.1}
TAIR10	AT2G19070.1	4E-86	spermidine hydroxycinnamoyl transferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	46273077	46273958	+
GWHAAZE00000007	mRNA	46273077	46273958	+
GWHAAZE00000007	exon	46273077	46273958	+
GWHAAZE00000007	CDS	46273077	46273958	+

Transcript Sequence
>GWHTAAZE024650 ATGGTGGATGGAGCAAGTGCACTACACTTTGTCACCGAGTGGGCCAAAATTGCACGCGGTGAACAGTTAAATAACCCTCCATTTCTTGATCGAACTGTATTAAAACACAAGGAGCCTTTACCTTCATCGCCGAGGTTTGATCACACAGAGTTTAGTCCACGTCCACTTTTGGTAGGCTTATCAAATAACTCGGAGGAACGAAAGAAGGAAACTACCATCACGATGCTAAAGCTAGACAGAGAAGAAATCGAGAAACTCAAGAGGAGGGCTAACGAGGTTCAAACTGGCAACAATTTGGGTCGGCCCTATAGTAGGTACGAGGCTCTGGCGGGTCATATGTGGAGGTGCACGAGCAAGGCACGCAACCACATGATCCAACAAATAACGAGTTTAGTTATACCCGTTGATTTTCGAAACCGCATCGATCCGCCGTTACCCAAGGGCTATTTTGGGAATGCAATTTTTCGAGCAACAGCAACAACTACAGCGGGTGAGCTACTCTCGAAGCCATTGCATTATGCTTCGAGTAAGATACGAGAAGCAATAAACAAGGCAACAAATGAGTATCTACAATCATCCCTCGTTTTTCTAAAAAGTCTAGACGATGTATCTAAATACTGCAATTTCCATACGCTTGGGTGTTCAAGAGGAGATTTTCGTGGGAACCCGAATATGGAGATAACAAGTTGGACAACATTACCCGTGTATGGTGCCGATTTCGGGTTCGGGAAGGAAATATATATGGGTCCCGGAGCTATTGGCTACGATGGGAAATCTTTCATCCTGCCCAGTCGTGATGAAGATGGATCCTTTACAATTGCATTGCGTTTGCAAGTGATTCACATGGAAGCTTTTAAGAAGTTCTTTTATGAGGAAATCTAA

Network for GWHGAAZE024616

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0209

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02458.16	Transferase	1	290	1.90E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13065	E2.3.1.133, HCT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.778
	SRR3591706	second leaf	25.571
	SRR3591707	mature leaf	7.273
	SRR3591708	Shoot apex	11.218
	SRR3591709	Stem	0.484
	SRR3591710	White floral bud	1.440
	SRR3591711	White flower	0.721
	SRR3591712	Green floral bud	3.483
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.517
	SRR8316896	Juvenile bud stage	2.473
	SRR8316897	Juvenile bud stage	2.714
	SRR8316894	Third green stage	0.448
	SRR8316900	Third green stage	3.264
	SRR8316901	Third green stage	3.235
	SRR8316898	Complete white stage	0.038
	SRR8316899	Complete white stage	4.673
	SRR8316903	Complete white stage	0.645
	SRR8316902	Silver flowering stage	0.481
	SRR8316904	Silver flowering stage	0.212
	SRR8316905	Silver flowering stage	0.063
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.265
SRP132670	SRR6706286	Control	1.864
	SRR6706287	Light intensity 50%	1.549
	SRR6706288	Light intensity 20%	2.448
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.376
	CNS0095593	Slightly white alabastrum(diploid) 2	0.599
	CNS0095594	Slightly white alabastrum(diploid) 3	1.416
	CNS0095595	Whole white alabastrum(diploid) 2	0.739
	CNS0095596	Whole white alabastrum(diploid) 3	0.758
	CNS0095597	Whole white alabastrum(diploid) 4	0.178
	CNS0095598	Silvery flower (diploied) 1	1.057
	CNS0095599	Silvery flower (diploied) 2	1.818
	CNS0095600	Silvery flower (diploied) 3	0.821
	CNS0095601	Golden flower (diploid) 1	1.029
	CNS0095602	Golden flower (diploid) 2	1.179
	CNS0095603	Golden flower (diploid) 3	1.307
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.677
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.087
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.456
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.784
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.606
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.149
	CNS0095610	Silvery flower (tetraploid) 1	1.993
	CNS0095611	Silvery flower (tetraploid) 2	3.047
	CNS0095612	Silvery flower (tetraploid) 3	2.750
	CNS0095613	Golden flower (tetraploid) 1	0.098
	CNS0095614	Golden flower (tetraploid) 2	0.173
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.220
	CRR073298	Stem 2	3.054
	CRR073299	Stem 3	1.397
	CRR073300	Leaf 1	1.647
	CRR073301	Leaf 2	1.745
	CRR073302	Leaf 3	1.928
	CRR073303	Juvenile bud 1	0.694
	CRR073304	Juvenile bud 2	0.347
	CRR073305	Juvenile bud 3	1.318
	CRR073306	Third green 1	0.117
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.164
	CRR073309	Second white 1	0.027
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.365
	CRR073316	Gold flowering 2	1.886
	CRR073317	Gold flowering 3	3.011
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000