Detail information of GWHGAAZE024618


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002274695.10PREDICTED: spermidine hydroxycinnamoyl transferase-like [Vitis vinifera]
Swissprottr|O64470|SHT_ARATH7E-160Spermidine hydroxycinnamoyl transferase
trEMBLtr|F6HYK9|F6HYK9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB59773.1}
TAIR10AT2G19070.12E-126spermidine hydroxycinnamoyl transferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4631633446317650+
GWHAAZE00000007mRNA4631633446317650+
GWHAAZE00000007exon4631633446317650+
GWHAAZE00000007CDS4631633446317650+
Transcript Sequence

Network for GWHGAAZE024618

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02458.16Transferase14351.40E-113
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13065E2.3.1.133, HCT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Phenylpropanoid biosynthesismap00940
Stilbenoid, diarylheptanoid and gingerol biosynthesismap00945
Flavonoid biosynthesismap00941

Gene Ontology

GO term OntologyName
GO:0016747molecular_functiontransferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.346
SRR3591706second leaf25.531
SRR3591707mature leaf4.222
SRR3591708Shoot apex8.265
SRR3591709Stem0.245
SRR3591710White floral bud14.492
SRR3591711White flower5.392
SRR3591712Green floral bud24.932
SRR3591713Yellow flower0.591
SRP173429 SRR8316895Juvenile bud stage 15.343
SRR8316896Juvenile bud stage 12.795
SRR8316897Juvenile bud stage 1.871
SRR8316894Third green stage 4.768
SRR8316900Third green stage 28.734
SRR8316901Third green stage 23.163
SRR8316898Complete white stage 9.520
SRR8316899Complete white stage 18.832
SRR8316903Complete white stage 10.312
SRR8316902Silver flowering stage2.973
SRR8316904Silver flowering stage5.283
SRR8316905Silver flowering stage2.493
SRR8316906Gold flowering stage 3.242
SRR8316907Gold flowering stage 6.063
SRR8316908Gold flowering stage 2.014
SRP132670SRR6706286Control24.826
SRR6706287Light intensity 50%26.390
SRR6706288Light intensity 20%29.897
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.037
CNS0095593Slightly white alabastrum(diploid) 26.914
CNS0095594Slightly white alabastrum(diploid) 35.977
CNS0095595Whole white alabastrum(diploid) 24.027
CNS0095596Whole white alabastrum(diploid) 34.612
CNS0095597Whole white alabastrum(diploid) 43.669
CNS0095598Silvery flower (diploied) 16.744
CNS0095599Silvery flower (diploied) 24.732
CNS0095600Silvery flower (diploied) 35.825
CNS0095601Golden flower (diploid) 14.684
CNS0095602Golden flower (diploid) 23.393
CNS0095603Golden flower (diploid) 33.576
CNS0095604Slightly white alabastrum(tetraploid) 18.057
CNS0095605Slightly white alabastrum(tetraploid) 25.413
CNS0095606Slightly white alabastrum(tetraploid) 318.645
CNS0095607Whole white alabastrum(tetraploid) 13.692
CNS0095608Whole white alabastrum(tetraploid) 21.038
CNS0095609Whole white alabastrum(tetraploid) 311.519
CNS0095610Silvery flower (tetraploid) 11.406
CNS0095611Silvery flower (tetraploid) 22.610
CNS0095612Silvery flower (tetraploid) 32.776
CNS0095613Golden flower (tetraploid) 10.192
CNS0095614Golden flower (tetraploid) 20.478
CNS0095615Golden flower (tetraploid) 30.095
CRA001975CRR073297Stem 126.337
CRR073298Stem 230.362
CRR073299Stem 335.801
CRR073300Leaf 135.539
CRR073301Leaf 233.431
CRR073302Leaf 357.302
CRR073303Juvenile bud 126.019
CRR073304Juvenile bud 280.850
CRR073305Juvenile bud 325.596
CRR073306Third green 19.005
CRR073307Third green 24.325
CRR073308Third green 39.344
CRR073309Second white 13.597
CRR073310Second white 20.959
CRR073311Second white 31.279
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.846
CRR073314Silver flowering 30.086
CRR073315Gold flowering 139.895
CRR073316Gold flowering 226.075
CRR073317Gold flowering 331.345
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.971
CRR073320Tawny withering 30.000