Detail information of GWHGAAZE024621


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273237.11.68943E-69PREDICTED: nuclear pore complex protein NUP43 [Vitis vinifera]
Swissprottr|Q24JJ9|NUP43_ARATH8E-64Nuclear pore complex protein NUP43 {ECO:0000303|PubMed:21189294}
trEMBLtr|D7U1G4|D7U1G4_VITVI6E-70Putative uncharacterized protein {ECO:0000313|EMBL:CBI36580.3}
TAIR10AT4G30840.17E-33Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4641793446422442-
GWHAAZE00000007mRNA4641793446422442-
GWHAAZE00000007exon4642242246422442-
GWHAAZE00000007exon4642108346421151-
GWHAAZE00000007exon4641928746419527-
GWHAAZE00000007exon4641808846418161-
GWHAAZE00000007exon4641793446417987-
GWHAAZE00000007CDS4642242246422442-
GWHAAZE00000007CDS4642108346421151-
GWHAAZE00000007CDS4641928746419527-
GWHAAZE00000007CDS4641808846418161-
GWHAAZE00000007CDS4641793446417987-
Transcript Sequence

Network for GWHGAAZE024621

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14305NUP43 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.641
SRR3591706second leaf7.128
SRR3591707mature leaf4.272
SRR3591708Shoot apex17.188
SRR3591709Stem9.007
SRR3591710White floral bud11.272
SRR3591711White flower37.001
SRR3591712Green floral bud15.891
SRR3591713Yellow flower29.711
SRP173429 SRR8316895Juvenile bud stage 13.027
SRR8316896Juvenile bud stage 16.501
SRR8316897Juvenile bud stage 7.303
SRR8316894Third green stage 4.274
SRR8316900Third green stage 16.416
SRR8316901Third green stage 8.841
SRR8316898Complete white stage 1.132
SRR8316899Complete white stage 13.902
SRR8316903Complete white stage 2.012
SRR8316902Silver flowering stage9.620
SRR8316904Silver flowering stage10.615
SRR8316905Silver flowering stage5.101
SRR8316906Gold flowering stage 28.384
SRR8316907Gold flowering stage 31.287
SRR8316908Gold flowering stage 32.129
SRP132670SRR6706286Control12.323
SRR6706287Light intensity 50%14.033
SRR6706288Light intensity 20%17.666
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.394
CNS0095593Slightly white alabastrum(diploid) 28.118
CNS0095594Slightly white alabastrum(diploid) 315.012
CNS0095595Whole white alabastrum(diploid) 27.346
CNS0095596Whole white alabastrum(diploid) 39.646
CNS0095597Whole white alabastrum(diploid) 45.250
CNS0095598Silvery flower (diploied) 112.829
CNS0095599Silvery flower (diploied) 28.899
CNS0095600Silvery flower (diploied) 312.984
CNS0095601Golden flower (diploid) 18.046
CNS0095602Golden flower (diploid) 212.200
CNS0095603Golden flower (diploid) 310.114
CNS0095604Slightly white alabastrum(tetraploid) 19.977
CNS0095605Slightly white alabastrum(tetraploid) 210.109
CNS0095606Slightly white alabastrum(tetraploid) 321.848
CNS0095607Whole white alabastrum(tetraploid) 13.841
CNS0095608Whole white alabastrum(tetraploid) 26.065
CNS0095609Whole white alabastrum(tetraploid) 315.855
CNS0095610Silvery flower (tetraploid) 117.541
CNS0095611Silvery flower (tetraploid) 213.862
CNS0095612Silvery flower (tetraploid) 318.139
CNS0095613Golden flower (tetraploid) 110.561
CNS0095614Golden flower (tetraploid) 216.306
CNS0095615Golden flower (tetraploid) 310.213
CRA001975CRR073297Stem 120.334
CRR073298Stem 220.674
CRR073299Stem 321.433
CRR073300Leaf 122.524
CRR073301Leaf 218.649
CRR073302Leaf 315.961
CRR073303Juvenile bud 124.423
CRR073304Juvenile bud 211.817
CRR073305Juvenile bud 320.542
CRR073306Third green 15.631
CRR073307Third green 23.359
CRR073308Third green 34.998
CRR073309Second white 126.730
CRR073310Second white 221.656
CRR073311Second white 327.406
CRR073312Silver flowering 118.714
CRR073313Silver flowering 217.043
CRR073314Silver flowering 327.490
CRR073315Gold flowering 19.949
CRR073316Gold flowering 219.006
CRR073317Gold flowering 312.632
CRR073318Tawny withering 114.426
CRR073319Tawny withering 216.966
CRR073320Tawny withering 312.815