Gene detail

Detail information of GWHGAAZE024625

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656633.1	1.628E-175	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Vitis vinifera]
Swissprot	tr\|Q94AN4\|AP2L1_ARATH	6E-114	AP2-like ethylene-responsive transcription factor At1g16060
trEMBL	tr\|F6HYM6\|F6HYM6_VITVI	3E-178	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59790.1}
TAIR10	AT1G16060.1	7E-84	ARIA-interacting double AP2 domain protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	46502248	46506266	+
GWHAAZE00000007	mRNA	46502248	46506266	+
GWHAAZE00000007	exon	46502248	46502408	+
GWHAAZE00000007	exon	46502486	46502568	+
GWHAAZE00000007	exon	46503366	46503454	+
GWHAAZE00000007	exon	46503567	46503640	+
GWHAAZE00000007	exon	46503919	46503969	+
GWHAAZE00000007	exon	46504103	46504179	+
GWHAAZE00000007	exon	46505740	46506266	+
GWHAAZE00000007	CDS	46502248	46502408	+
GWHAAZE00000007	CDS	46502486	46502568	+
GWHAAZE00000007	CDS	46503366	46503454	+
GWHAAZE00000007	CDS	46503567	46503640	+
GWHAAZE00000007	CDS	46503919	46503969	+
GWHAAZE00000007	CDS	46504103	46504179	+
GWHAAZE00000007	CDS	46505740	46506266	+

Transcript Sequence
>GWHTAAZE024659 ATGGGGAAAGTATCACAACAGATTCAAAGAAGCAATTACAATAATGCCAACAAAATTAATGTTAATGCTAATGGTATTATTACTAAGGTGAAAAGAACAAGGAAGACTGTCCCTAGAGACTCTCCACCTCAACGTAGCTCGATTTATCGGGGCGTCACAAGGCATCGATGGACCGGTAGGTATGAAGCGCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAATAAGAAAGGACGACAAGGTGCTTATGATGATGAAGAAACAGCTGCACATGCGTACGATTTGGCAGCGCTCAAGTACTGGGGTCCTGAAACCATTCTTAATTTTCCGTTAGTGACATACCAAAAGGAGCTGAAAGAAATGGAAAGTCAATCAAGAGAGGAATATATTGGCTCACTAAGAAGGAAAAGCAGTGGTTTTTCTCGAGGAGTGTCAAAATACAGAGGAGTTGCAAGGCATCATCACAATGGAAGATGGGAAGCTCGAATTGGAAGAGTTTTTGGCAACAAATACCTTTATCTTGGGACATACGCTACCCAAGAAGAGGCAGCAGTGGCATATGATATGGCAGCTATTGAATACCGTGGTCTTAACGCGGTTACCAACTTTGACCTTAGCCGTTATATAAAATGGCTAAAACCTGAGAACAATAACACCAATAACCCTAATCCTAACTCTAATCCTATCATTGACACAAATTTGACACCCGCCCCTGACCAGGACCAAATAACAAATTTCATACACCATGAAGAACAACCTCCTCCGTTAGTGGCGGCTGATGTCGCCCTAGCTCGTCCCCGCCCAACCACTGCCACGTCAGCCTTAGGGCTTCTTCTACAATCATCAAAATTCAAGGAGATGATGGAAATGACCTCAGTCGCCGAGGATCCCACAGCACTCCCGGCTGAGTCAGAACCACCACGTGGCAGTTTCCCGGAAGATATACAGACTTACTTCGAGTCCCAAGACTTGGGCAGTTATGGTGGTGGTGGAGGAGATGATTTTCTCTTTGGAGATCTCAATTCTTTCATGCAGCCTATGTTGCAGTGTGACTTTTAA

Network for GWHGAAZE024625

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	48	103	1.60E-09
PF00847.21	AP2	146	197	1.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.163
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.124
	SRR3591710	White floral bud	0.458
	SRR3591711	White flower	0.216
	SRR3591712	Green floral bud	0.482
	SRR3591713	Yellow flower	0.626
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.057
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.049
	SRR8316903	Complete white stage	0.048
	SRR8316902	Silver flowering stage	0.012
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.065
	SRR8316906	Gold flowering stage	0.038
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.130
SRP132670	SRR6706286	Control	0.024
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.039
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.061
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.040
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.039
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.076
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.064
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.197
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.030
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	3.055
	CRR073319	Tawny withering 2	0.738
	CRR073320	Tawny withering 3	4.500