Detail information of GWHGAAZE024638


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN71824.17.9717E-179hypothetical protein VITISV_042464 [Vitis vinifera]
Swissprottr|Q940Q4|ATL13_ARATH3E-105RING-H2 finger protein ATL13
trEMBLtr|A5AYP8|A5AYP8_VITVI3E-179Putative uncharacterized protein {ECO:0000313|EMBL:CAN71824.1}
TAIR10AT4G30400.12E-83RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4671569646717186+
GWHAAZE00000007mRNA4671569646717186+
GWHAAZE00000007exon4671569646716279+
GWHAAZE00000007exon4671634046717186+
GWHAAZE00000007CDS4671569646716279+
GWHAAZE00000007CDS4671634046717186+
Transcript Sequence

Network for GWHGAAZE024638

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21261699.10E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.438
SRR3591706second leaf6.571
SRR3591707mature leaf12.479
SRR3591708Shoot apex4.484
SRR3591709Stem1.009
SRR3591710White floral bud7.674
SRR3591711White flower8.241
SRR3591712Green floral bud5.461
SRR3591713Yellow flower1.204
SRP173429 SRR8316895Juvenile bud stage 2.699
SRR8316896Juvenile bud stage 2.742
SRR8316897Juvenile bud stage 1.333
SRR8316894Third green stage 1.629
SRR8316900Third green stage 4.957
SRR8316901Third green stage 3.465
SRR8316898Complete white stage 2.078
SRR8316899Complete white stage 7.857
SRR8316903Complete white stage 1.853
SRR8316902Silver flowering stage0.812
SRR8316904Silver flowering stage1.200
SRR8316905Silver flowering stage0.161
SRR8316906Gold flowering stage 1.255
SRR8316907Gold flowering stage 0.844
SRR8316908Gold flowering stage 3.430
SRP132670SRR6706286Control4.404
SRR6706287Light intensity 50%5.993
SRR6706288Light intensity 20%6.192
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.716
CNS0095593Slightly white alabastrum(diploid) 22.012
CNS0095594Slightly white alabastrum(diploid) 30.771
CNS0095595Whole white alabastrum(diploid) 21.966
CNS0095596Whole white alabastrum(diploid) 32.246
CNS0095597Whole white alabastrum(diploid) 41.570
CNS0095598Silvery flower (diploied) 13.723
CNS0095599Silvery flower (diploied) 22.188
CNS0095600Silvery flower (diploied) 31.762
CNS0095601Golden flower (diploid) 12.044
CNS0095602Golden flower (diploid) 22.858
CNS0095603Golden flower (diploid) 32.460
CNS0095604Slightly white alabastrum(tetraploid) 13.469
CNS0095605Slightly white alabastrum(tetraploid) 23.112
CNS0095606Slightly white alabastrum(tetraploid) 37.974
CNS0095607Whole white alabastrum(tetraploid) 12.475
CNS0095608Whole white alabastrum(tetraploid) 20.471
CNS0095609Whole white alabastrum(tetraploid) 35.890
CNS0095610Silvery flower (tetraploid) 19.202
CNS0095611Silvery flower (tetraploid) 28.836
CNS0095612Silvery flower (tetraploid) 31.291
CNS0095613Golden flower (tetraploid) 11.500
CNS0095614Golden flower (tetraploid) 24.901
CNS0095615Golden flower (tetraploid) 31.491
CRA001975CRR073297Stem 11.360
CRR073298Stem 21.888
CRR073299Stem 31.677
CRR073300Leaf 12.159
CRR073301Leaf 22.486
CRR073302Leaf 31.484
CRR073303Juvenile bud 12.000
CRR073304Juvenile bud 21.317
CRR073305Juvenile bud 32.305
CRR073306Third green 10.200
CRR073307Third green 20.098
CRR073308Third green 30.504
CRR073309Second white 10.463
CRR073310Second white 20.321
CRR073311Second white 30.000
CRR073312Silver flowering 10.066
CRR073313Silver flowering 20.158
CRR073314Silver flowering 30.074
CRR073315Gold flowering 14.950
CRR073316Gold flowering 23.373
CRR073317Gold flowering 33.497
CRR073318Tawny withering 10.331
CRR073319Tawny withering 20.110
CRR073320Tawny withering 31.086