Gene detail

Detail information of GWHGAAZE024642

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006453455.1	hypothetical protein CICLE_v10008147mg [Citrus clementina]
Swissprot	tr\|Q1PDI2\|DGK4_ARATH	Diacylglycerol kinase 4
trEMBL	tr\|V4UQV2\|V4UQV2_9ROSI	Diacylglycerol kinase {ECO:0000256\|RuleBase:RU361128}
TAIR10	AT5G57690.1	diacylglycerol kinase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	46941689	46958999	+
GWHAAZE00000007	mRNA	46941689	46958999	+
GWHAAZE00000007	exon	46941689	46942009	+
GWHAAZE00000007	exon	46945920	46946042	+
GWHAAZE00000007	exon	46947727	46947864	+
GWHAAZE00000007	exon	46947948	46948033	+
GWHAAZE00000007	exon	46949984	46950071	+
GWHAAZE00000007	exon	46952111	46952186	+
GWHAAZE00000007	exon	46952784	46952866	+
GWHAAZE00000007	exon	46954016	46954086	+
GWHAAZE00000007	exon	46955925	46956002	+
GWHAAZE00000007	exon	46956715	46956802	+
GWHAAZE00000007	exon	46957625	46957741	+
GWHAAZE00000007	exon	46958841	46958999	+
GWHAAZE00000007	CDS	46941689	46942009	+
GWHAAZE00000007	CDS	46945920	46946042	+
GWHAAZE00000007	CDS	46947727	46947864	+
GWHAAZE00000007	CDS	46947948	46948033	+
GWHAAZE00000007	CDS	46949984	46950071	+
GWHAAZE00000007	CDS	46952111	46952186	+
GWHAAZE00000007	CDS	46952784	46952866	+
GWHAAZE00000007	CDS	46954016	46954086	+
GWHAAZE00000007	CDS	46955925	46956002	+
GWHAAZE00000007	CDS	46956715	46956802	+
GWHAAZE00000007	CDS	46957625	46957741	+
GWHAAZE00000007	CDS	46958841	46958999	+

Transcript Sequence
>GWHTAAZE024676 ATGGAGAATTCGCCGGGGTCCGATCGGATCGCGGCGAGATCGTCGATGATCGATCAGATACGTGGGTGTACGGCGGGAGGCCCCCGCATCTCGAAGGAGGAACTGAAATATAAGATTACTATGCCCCTCCACCTCCGGCTCGCAATGCGCGACGCCGTTTTGGCCAAGGATGTCAATGCTGGAATCTGTAATTTTGATGCGGATGCAGATCCTGTCGAGGCACCCGAAGCTCCGCTGGTTGTGTTTATTAATTCACGGAGCGGGGGAAGGCATGGGCCAGAGCTCAAAGGGAGGCTGCAGGAATTGATGAGCGAGGAACAGGTATTTGACCTTCAAACTGTGAAGCCTCATGAATTTGTTAAGTATGCATTGGGTTGCTTGGAGAAGTTGGCTGGTCATGGGGATCGTTGCGCCAAAGTGACTCGTAAAAAGCTTAGGGTTGTGGTTGCAGGAGGTGACGGTACTGTGGGTTGGGTCCTAGGCTGCCTTGGGGACCTTCATAAGCAGGGCCGGAACCCAGTTCCACCAACTGGAATCATGCCTCTTGGTACAGGCAATGACTTGTCCAGGACTTTTGGTTGGGGTGGCTCATTTCCTTTTAACTGGAAACCATATACCAAAAGAGCTCTTGACAGGGTTATCAATGGCCCAATTTGCCGTCTGGATAGTTGGAATCTTCTAATATCAATGCCAGCTGGGGAGCCGATGGAAACACCCCATTGTTTGAAGCCGACTGAAGACTGTTCTCTTGATGAGGGATTGGCAGTCGAAGGGGAGTTACCTGAAAAAGTCTCTTGCTACGAGGGAGTGTTCTACAATTACTTCAGCATAGGAATGGATGCCCAAGTTGCTTACGGCTTCCACCATTTGCGCAATGAAAAACCTTACCTTGCACAAGGCCCTATTGCAAATAAGATTATTTACTCCGGATACAGCTGCAAACAAGGGTGGTTTTTCACACCTTGCATTGCGGACCCGAGTTTAAGGGGACTAAAGAACATTTTAAGGATGCATGTTAAAAAGATCAACTCCTCAAAGTGGGAGCAGGTTCCTGTCCCCTCAAGTGTCAGGGCTATAGTTGCTTTAAATCTTCATAACTACGGAAGTGGGAGAAATCCGTGGGGAAATCTGAAGCCAGAGTATATGGAAAAGAAAGGCTTTGTTGAAGCCCAAGCTGATGATGGTCTCCTAGAAGTTTTTGGTCTAAAACAAGGATGGCATGCTTCCTTTGTTATGGTTGAACTTATCTCAGCCAAACACATTGCCCAGGCTTCAGCAATTCGATTTGAATTTAGAGGTGGAGAGTGGAGAGAAGCGTTTATGCAGGTCGACGGGGAGCCATGGAAGCAACCAATGGACAAAGACTACTCAACTTTTCTCGAGATTAAGAGGGTACCTTTTCAATCAGTTATGATAAGTGGAGACTAA

Network for GWHGAAZE024642

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00781.25	DAGK_cat	78	210	8.30E-26
PF00609.20	DAGK_acc	270	447	2.00E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00901	dgkA, DGK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564
		Phosphatidylinositol signaling system	map04070
		Phospholipase D signaling pathway	map04072
		Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0007205	biological_process	protein kinase C-activating G protein-coupled receptor signaling pathway
GO:0016301	molecular_function	kinase activity
GO:0004143	molecular_function	diacylglycerol kinase activity
GO:0003951	molecular_function	NAD+ kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.591
	SRR3591706	second leaf	0.654
	SRR3591707	mature leaf	0.080
	SRR3591708	Shoot apex	0.458
	SRR3591709	Stem	0.733
	SRR3591710	White floral bud	94.105
	SRR3591711	White flower	3.914
	SRR3591712	Green floral bud	86.445
	SRR3591713	Yellow flower	1.227
SRP173429	SRR8316895	Juvenile bud stage	1.569
	SRR8316896	Juvenile bud stage	1.786
	SRR8316897	Juvenile bud stage	2.042
	SRR8316894	Third green stage	2.828
	SRR8316900	Third green stage	51.779
	SRR8316901	Third green stage	43.744
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.078
	SRR8316903	Complete white stage	0.541
	SRR8316902	Silver flowering stage	1.290
	SRR8316904	Silver flowering stage	2.264
	SRR8316905	Silver flowering stage	0.678
	SRR8316906	Gold flowering stage	0.419
	SRR8316907	Gold flowering stage	0.265
	SRR8316908	Gold flowering stage	0.492
SRP132670	SRR6706286	Control	33.572
	SRR6706287	Light intensity 50%	35.456
	SRR6706288	Light intensity 20%	34.056
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.389
	CNS0095593	Slightly white alabastrum(diploid) 2	11.072
	CNS0095594	Slightly white alabastrum(diploid) 3	7.523
	CNS0095595	Whole white alabastrum(diploid) 2	100.708
	CNS0095596	Whole white alabastrum(diploid) 3	114.412
	CNS0095597	Whole white alabastrum(diploid) 4	141.776
	CNS0095598	Silvery flower (diploied) 1	4.249
	CNS0095599	Silvery flower (diploied) 2	12.430
	CNS0095600	Silvery flower (diploied) 3	3.903
	CNS0095601	Golden flower (diploid) 1	5.410
	CNS0095602	Golden flower (diploid) 2	3.633
	CNS0095603	Golden flower (diploid) 3	3.819
	CNS0095604	Slightly white alabastrum(tetraploid) 1	75.682
	CNS0095605	Slightly white alabastrum(tetraploid) 2	81.083
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.814
	CNS0095607	Whole white alabastrum(tetraploid) 1	187.876
	CNS0095608	Whole white alabastrum(tetraploid) 2	233.126
	CNS0095609	Whole white alabastrum(tetraploid) 3	107.960
	CNS0095610	Silvery flower (tetraploid) 1	2.970
	CNS0095611	Silvery flower (tetraploid) 2	10.914
	CNS0095612	Silvery flower (tetraploid) 3	30.698
	CNS0095613	Golden flower (tetraploid) 1	2.148
	CNS0095614	Golden flower (tetraploid) 2	0.620
	CNS0095615	Golden flower (tetraploid) 3	17.312
CRA001975	CRR073297	Stem 1	4.871
	CRR073298	Stem 2	3.317
	CRR073299	Stem 3	2.986
	CRR073300	Leaf 1	52.777
	CRR073301	Leaf 2	30.095
	CRR073302	Leaf 3	16.463
	CRR073303	Juvenile bud 1	52.400
	CRR073304	Juvenile bud 2	46.980
	CRR073305	Juvenile bud 3	5.371
	CRR073306	Third green 1	29.521
	CRR073307	Third green 2	44.173
	CRR073308	Third green 3	30.789
	CRR073309	Second white 1	2.509
	CRR073310	Second white 2	6.170
	CRR073311	Second white 3	5.969
	CRR073312	Silver flowering 1	30.085
	CRR073313	Silver flowering 2	32.290
	CRR073314	Silver flowering 3	15.181
	CRR073315	Gold flowering 1	43.433
	CRR073316	Gold flowering 2	7.916
	CRR073317	Gold flowering 3	22.797
	CRR073318	Tawny withering 1	29.023
	CRR073319	Tawny withering 2	24.266
	CRR073320	Tawny withering 3	31.196