Gene detail

Detail information of GWHGAAZE024653

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273742.2	9.1491E-165	PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Vitis vinifera]
COG	YP_003830841.1	2E-14	endo-1,3(4)-beta-glucanase
Swissprot	tr\|Q38910\|XTH23_ARATH	6E-151	Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBL	tr\|F6GXE7\|F6GXE7_VITVI	3E-165	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}
TAIR10	AT4G25810.1	4E-120	xyloglucan endotransglycosylase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47134254	47135326	-
GWHAAZE00000007	mRNA	47134254	47135326	-
GWHAAZE00000007	exon	47134254	47134602	-
GWHAAZE00000007	exon	47134732	47134925	-
GWHAAZE00000007	exon	47135063	47135326	-
GWHAAZE00000007	CDS	47135063	47135326	-
GWHAAZE00000007	CDS	47134732	47134925	-
GWHAAZE00000007	CDS	47134254	47134602	-

Transcript Sequence
>GWHTAAZE024687 ATGCCGGTTTCTTCTTCAATATTATTTGGGTTCATTCTTGGCTCACTAGTGGTTGCCTCAGCAGCTAACTTCCACCAAGACTTTGATGTTACTTGGGGTGATGGCCGTGGAAAGATACTCAACAATGGCGACCTTCTCACCCTCTCTCTTGACAAAGCCTCCGGCTCTGGCTTTCAGTCTAATAATGAGTATCTGTTTGGAAAGATCGATATGCAGCTCAAACTTGTCCCCGGAAACTCAGCTGGCACTGTCACTGCTTATTATTTATCATCGCAAGGACCTACCCACGATGAGATAGACTTTGAATTCCTCGGAAACCTGAGCGGCGATCCTTACACTCTTCATACCAATGTCTTCAGCCAAGGCAAAGGAGAGAGAGAGCAACAATTTCATCTTTGGTTTGACCCAACCGCTGATTTCCACACCTACTCCATCCTTTGGAACCCCCAACGCATTATCTTTTCTGTAGATGGCACGCCAATCAGAGAGTACAAGAATGCCGAATCAGTTGGTGTTTCATACCCGAAGAACCAACCAATGAGAATATATTCAAGCCTATGGAATGCCGATGATTGGGCTACAAGAGGTGGGCTCGTGAAGACAGACTGGACTCAATCTCCTTTCACTGCATCTTACAGAAACTTCAAAGCAGAAGCTTCCAACAACGGCGCATGGCTCACAGAAGAGTTGGACTCCACGAGCCAAGGGAGATTGAAATGGGTGCAAGACAACTACATGATCTACAATTACTGCACGGACACCAAGAGATATCCTCAAGGTCTACCCAAAGAATGCAACATGTCCTAA

Network for GWHGAAZE024653

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0283

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00722.22	Glyco_hydro_16	25	204	1.20E-62
PF06955.13	XET_C	221	265	5.10E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14504	TCH4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0010411	biological_process	xyloglucan metabolic process
GO:0042546	biological_process	cell wall biogenesis
GO:0006073	biological_process	cellular glucan metabolic process
GO:0005618	cellular_component	cell wall
GO:0048046	cellular_component	apoplast
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	69.961
	SRR3591706	second leaf	2.036
	SRR3591707	mature leaf	0.027
	SRR3591708	Shoot apex	5.444
	SRR3591709	Stem	95.468
	SRR3591710	White floral bud	2.049
	SRR3591711	White flower	3.601
	SRR3591712	Green floral bud	0.554
	SRR3591713	Yellow flower	1.446
SRP173429	SRR8316895	Juvenile bud stage	14.698
	SRR8316896	Juvenile bud stage	5.885
	SRR8316897	Juvenile bud stage	25.069
	SRR8316894	Third green stage	0.521
	SRR8316900	Third green stage	0.484
	SRR8316901	Third green stage	3.126
	SRR8316898	Complete white stage	0.267
	SRR8316899	Complete white stage	4.423
	SRR8316903	Complete white stage	0.078
	SRR8316902	Silver flowering stage	4.641
	SRR8316904	Silver flowering stage	0.832
	SRR8316905	Silver flowering stage	0.418
	SRR8316906	Gold flowering stage	0.400
	SRR8316907	Gold flowering stage	0.714
	SRR8316908	Gold flowering stage	1.306
SRP132670	SRR6706286	Control	1.028
	SRR6706287	Light intensity 50%	1.343
	SRR6706288	Light intensity 20%	1.926
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.523
	CNS0095593	Slightly white alabastrum(diploid) 2	2.778
	CNS0095594	Slightly white alabastrum(diploid) 3	4.419
	CNS0095595	Whole white alabastrum(diploid) 2	2.439
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	1.229
	CNS0095598	Silvery flower (diploied) 1	4.982
	CNS0095599	Silvery flower (diploied) 2	5.287
	CNS0095600	Silvery flower (diploied) 3	4.916
	CNS0095601	Golden flower (diploid) 1	7.480
	CNS0095602	Golden flower (diploid) 2	2.990
	CNS0095603	Golden flower (diploid) 3	2.392
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.021
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.142
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.138
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.108
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.063
	CNS0095610	Silvery flower (tetraploid) 1	0.353
	CNS0095611	Silvery flower (tetraploid) 2	0.030
	CNS0095612	Silvery flower (tetraploid) 3	0.310
	CNS0095613	Golden flower (tetraploid) 1	0.085
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.018
CRA001975	CRR073297	Stem 1	4.874
	CRR073298	Stem 2	1.561
	CRR073299	Stem 3	3.858
	CRR073300	Leaf 1	1.188
	CRR073301	Leaf 2	7.065
	CRR073302	Leaf 3	2.919
	CRR073303	Juvenile bud 1	1.003
	CRR073304	Juvenile bud 2	0.767
	CRR073305	Juvenile bud 3	6.185
	CRR073306	Third green 1	4.488
	CRR073307	Third green 2	11.611
	CRR073308	Third green 3	3.824
	CRR073309	Second white 1	0.059
	CRR073310	Second white 2	0.833
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.742
	CRR073313	Silver flowering 2	0.859
	CRR073314	Silver flowering 3	0.479
	CRR073315	Gold flowering 1	162.874
	CRR073316	Gold flowering 2	264.196
	CRR073317	Gold flowering 3	54.404
	CRR073318	Tawny withering 1	93.872
	CRR073319	Tawny withering 2	122.471
	CRR073320	Tawny withering 3	179.748