Gene detail

Detail information of GWHGAAZE024654

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273742.2	1.338E-168	PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Vitis vinifera]
COG	YP_005432194.1	2E-14	putative beta-glucanase
Swissprot	tr\|Q38910\|XTH23_ARATH	2E-151	Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBL	tr\|F6GXE7\|F6GXE7_VITVI	5E-169	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}
TAIR10	AT4G25810.1	2E-120	xyloglucan endotransglycosylase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47140129	47141150	-
GWHAAZE00000007	mRNA	47140129	47141150	-
GWHAAZE00000007	exon	47140129	47140477	-
GWHAAZE00000007	exon	47140601	47140794	-
GWHAAZE00000007	exon	47140887	47141150	-
GWHAAZE00000007	CDS	47140887	47141150	-
GWHAAZE00000007	CDS	47140601	47140794	-
GWHAAZE00000007	CDS	47140129	47140477	-

Transcript Sequence
>GWHTAAZE024688 ATGGCGGTTTCTTCTTCAGTTTTATTTGGGTTCATTTTCGGCTCTCTAGTGGTTGCCTCAGCAGCTAACTTCTACCAAGACTTTGATCTTACTTGGGGCGATGGTCGTGGTAAGATACTCGACAACGGCGATCTCCTCACTCTTTCTCTTGACAAACCCTCCGGCTCTGGCTTCCGGTCCAAGAACGAGTATCTATTTGGAAAGATTGATATGCAGCTCAAACTTGTTCCTGGAAACTCGGCTGGCACTGTCACTGCTTATTATTTATCATCGCAAGGACCGACCCACGATGAGATAGACTTTGAATTTTTGGGAAACCTGAGCGGCGATCCTTACACTCTACATACCAACGTGTTCAGCCAAGGCAAAGGAGACAGGGAGCAACAATTCCACCTTTGGTTTGACCCAACTGCTGATTTCCATACATACTCCATCCTTTGGAACCCCCAACGCATTATCTTTTCTGTAGATGGGACACCCATAAGAGAGTTCAAGAACGCCGAGTCAGTTGGTGTACCATACCCAAAGAACCAACCAATGAGGATATACTCTAGCCTATGGAATGCCGACGACTGGGCCACAAGAGGTGGGCTCGTTAAGACTGACTGGAGTCAAGCTCCTTTCACTGCATCCTATAGAAACTTCAACGCCGAAGCTTCTAACAATGGGGCATGGCTCACTGAAGAGTTGGACTCGACAAGCCAGGGAAGGTTGAAATGGGTGCAAAACAATTATATGATCTACAGTTACTGCACAGACACTAAAAGATACCCTCAAGGCCTTCCCAAAGAATGTAACATCTCCTAG

Network for GWHGAAZE024654

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0283

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00722.22	Glyco_hydro_16	25	204	4.60E-62
PF06955.13	XET_C	221	265	1.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14504	TCH4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0010411	biological_process	xyloglucan metabolic process
GO:0042546	biological_process	cell wall biogenesis
GO:0006073	biological_process	cellular glucan metabolic process
GO:0005618	cellular_component	cell wall
GO:0048046	cellular_component	apoplast
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	194.204
	SRR3591706	second leaf	3.647
	SRR3591707	mature leaf	0.825
	SRR3591708	Shoot apex	14.993
	SRR3591709	Stem	120.445
	SRR3591710	White floral bud	6.284
	SRR3591711	White flower	11.376
	SRR3591712	Green floral bud	6.063
	SRR3591713	Yellow flower	2.757
SRP173429	SRR8316895	Juvenile bud stage	81.834
	SRR8316896	Juvenile bud stage	54.198
	SRR8316897	Juvenile bud stage	109.803
	SRR8316894	Third green stage	5.087
	SRR8316900	Third green stage	5.669
	SRR8316901	Third green stage	16.808
	SRR8316898	Complete white stage	3.162
	SRR8316899	Complete white stage	31.730
	SRR8316903	Complete white stage	3.594
	SRR8316902	Silver flowering stage	24.066
	SRR8316904	Silver flowering stage	7.931
	SRR8316905	Silver flowering stage	5.794
	SRR8316906	Gold flowering stage	5.316
	SRR8316907	Gold flowering stage	8.354
	SRR8316908	Gold flowering stage	11.499
SRP132670	SRR6706286	Control	6.280
	SRR6706287	Light intensity 50%	12.576
	SRR6706288	Light intensity 20%	13.682
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.373
	CNS0095593	Slightly white alabastrum(diploid) 2	45.236
	CNS0095594	Slightly white alabastrum(diploid) 3	30.872
	CNS0095595	Whole white alabastrum(diploid) 2	20.173
	CNS0095596	Whole white alabastrum(diploid) 3	3.226
	CNS0095597	Whole white alabastrum(diploid) 4	15.036
	CNS0095598	Silvery flower (diploied) 1	32.711
	CNS0095599	Silvery flower (diploied) 2	35.375
	CNS0095600	Silvery flower (diploied) 3	24.671
	CNS0095601	Golden flower (diploid) 1	24.824
	CNS0095602	Golden flower (diploid) 2	21.774
	CNS0095603	Golden flower (diploid) 3	18.644
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.564
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.668
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.664
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.633
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.431
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.916
	CNS0095610	Silvery flower (tetraploid) 1	2.703
	CNS0095611	Silvery flower (tetraploid) 2	0.450
	CNS0095612	Silvery flower (tetraploid) 3	5.264
	CNS0095613	Golden flower (tetraploid) 1	3.184
	CNS0095614	Golden flower (tetraploid) 2	0.450
	CNS0095615	Golden flower (tetraploid) 3	0.177
CRA001975	CRR073297	Stem 1	12.916
	CRR073298	Stem 2	5.535
	CRR073299	Stem 3	7.821
	CRR073300	Leaf 1	6.392
	CRR073301	Leaf 2	17.859
	CRR073302	Leaf 3	7.359
	CRR073303	Juvenile bud 1	3.729
	CRR073304	Juvenile bud 2	2.304
	CRR073305	Juvenile bud 3	20.352
	CRR073306	Third green 1	26.484
	CRR073307	Third green 2	62.914
	CRR073308	Third green 3	32.410
	CRR073309	Second white 1	0.821
	CRR073310	Second white 2	0.346
	CRR073311	Second white 3	0.612
	CRR073312	Silver flowering 1	1.117
	CRR073313	Silver flowering 2	0.225
	CRR073314	Silver flowering 3	0.305
	CRR073315	Gold flowering 1	128.562
	CRR073316	Gold flowering 2	242.584
	CRR073317	Gold flowering 3	78.561
	CRR073318	Tawny withering 1	182.570
	CRR073319	Tawny withering 2	210.965
	CRR073320	Tawny withering 3	362.454