Detail information of GWHGAAZE024655


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN80250.19.4992E-166hypothetical protein VITISV_036640 [Vitis vinifera]
COGYP_003830841.11E-14endo-1,3(4)-beta-glucanase
Swissprottr|P24806|XTH24_ARATH6E-150Xyloglucan endotransglucosylase/hydrolase protein 24 (Precursor)
trEMBLtr|A5ANA9|A5ANA9_VITVI4E-166Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}
TAIR10AT4G30270.13E-119xyloglucan endotransglucosylase/hydrolase 24

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4714283447143823-
GWHAAZE00000007mRNA4714283447143823-
GWHAAZE00000007exon4714283447143182-
GWHAAZE00000007exon4714329047143483-
GWHAAZE00000007exon4714356347143823-
GWHAAZE00000007CDS4714356347143823-
GWHAAZE00000007CDS4714329047143483-
GWHAAZE00000007CDS4714283447143182-
Transcript Sequence

Network for GWHGAAZE024655

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0283


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00722.22Glyco_hydro_16242036.70E-63
PF06955.13XET_C2202643.00E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14504TCH4 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0010411biological_processxyloglucan metabolic process
GO:0042546biological_processcell wall biogenesis
GO:0006073biological_processcellular glucan metabolic process
GO:0005618cellular_componentcell wall
GO:0048046cellular_componentapoplast
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf94.590
SRR3591706second leaf3.991
SRR3591707mature leaf0.052
SRR3591708Shoot apex23.730
SRR3591709Stem55.459
SRR3591710White floral bud9.979
SRR3591711White flower11.973
SRR3591712Green floral bud7.368
SRR3591713Yellow flower4.379
SRP173429 SRR8316895Juvenile bud stage 67.554
SRR8316896Juvenile bud stage 63.251
SRR8316897Juvenile bud stage 78.579
SRR8316894Third green stage 8.301
SRR8316900Third green stage 18.577
SRR8316901Third green stage 43.942
SRR8316898Complete white stage 1.176
SRR8316899Complete white stage 66.461
SRR8316903Complete white stage 0.816
SRR8316902Silver flowering stage12.841
SRR8316904Silver flowering stage3.648
SRR8316905Silver flowering stage2.218
SRR8316906Gold flowering stage 5.241
SRR8316907Gold flowering stage 9.030
SRR8316908Gold flowering stage 4.855
SRP132670SRR6706286Control5.833
SRR6706287Light intensity 50%9.395
SRR6706288Light intensity 20%6.271
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.721
CNS0095593Slightly white alabastrum(diploid) 237.157
CNS0095594Slightly white alabastrum(diploid) 338.188
CNS0095595Whole white alabastrum(diploid) 227.250
CNS0095596Whole white alabastrum(diploid) 33.500
CNS0095597Whole white alabastrum(diploid) 421.615
CNS0095598Silvery flower (diploied) 171.568
CNS0095599Silvery flower (diploied) 271.334
CNS0095600Silvery flower (diploied) 335.431
CNS0095601Golden flower (diploid) 164.873
CNS0095602Golden flower (diploid) 250.007
CNS0095603Golden flower (diploid) 345.950
CNS0095604Slightly white alabastrum(tetraploid) 10.323
CNS0095605Slightly white alabastrum(tetraploid) 20.729
CNS0095606Slightly white alabastrum(tetraploid) 30.847
CNS0095607Whole white alabastrum(tetraploid) 10.707
CNS0095608Whole white alabastrum(tetraploid) 20.451
CNS0095609Whole white alabastrum(tetraploid) 30.533
CNS0095610Silvery flower (tetraploid) 13.378
CNS0095611Silvery flower (tetraploid) 20.090
CNS0095612Silvery flower (tetraploid) 32.249
CNS0095613Golden flower (tetraploid) 11.916
CNS0095614Golden flower (tetraploid) 21.036
CNS0095615Golden flower (tetraploid) 30.617
CRA001975CRR073297Stem 121.954
CRR073298Stem 222.855
CRR073299Stem 323.690
CRR073300Leaf 148.698
CRR073301Leaf 280.089
CRR073302Leaf 328.897
CRR073303Juvenile bud 133.779
CRR073304Juvenile bud 226.734
CRR073305Juvenile bud 362.661
CRR073306Third green 122.364
CRR073307Third green 225.136
CRR073308Third green 314.931
CRR073309Second white 13.970
CRR073310Second white 28.218
CRR073311Second white 310.433
CRR073312Silver flowering 136.650
CRR073313Silver flowering 228.943
CRR073314Silver flowering 322.106
CRR073315Gold flowering 1123.025
CRR073316Gold flowering 2246.573
CRR073317Gold flowering 3112.073
CRR073318Tawny withering 199.000
CRR073319Tawny withering 2226.455
CRR073320Tawny withering 3183.491