Gene detail

Detail information of GWHGAAZE024658

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273742.2	5.4084E-167	PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Vitis vinifera]
COG	YP_005432194.1	5E-14	putative beta-glucanase
Swissprot	tr\|P24806\|XTH24_ARATH	1E-148	Xyloglucan endotransglucosylase/hydrolase protein 24 (Precursor)
trEMBL	tr\|F6GXE7\|F6GXE7_VITVI	2E-167	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}
TAIR10	AT4G30270.1	7E-118	xyloglucan endotransglucosylase/hydrolase 24

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47169957	47170969	-
GWHAAZE00000007	mRNA	47169957	47170969	-
GWHAAZE00000007	exon	47170694	47170969	-
GWHAAZE00000007	exon	47170415	47170608	-
GWHAAZE00000007	exon	47169957	47170305	-
GWHAAZE00000007	CDS	47170694	47170969	-
GWHAAZE00000007	CDS	47170415	47170608	-
GWHAAZE00000007	CDS	47169957	47170305	-

Transcript Sequence
>GWHTAAZE024692 ATGGCGGTTTCTTCTTCTATTTCAATTGGGTTGATGATATCTCTCATGTTTGGCTCCATAATGGTGGCTTCAGCATCCAACCTCTACCAAGACTTTGATGTTACTTGGGGCGATGGCCGTGGTAAGATATTCAACAACGGCAATCTCCTCACTCTATCTCTTGACAAAGCCTCTGGCTCTGGCTTCCAGTCGAAACACGAATATCTATTTGGAAAGATTGATATGCAGATCAAACTTGTACCTGGAAACTCCGCCGGCACCGTAACGGCTTATTATTTATCGTCACAAGGACCAACTCACGATGAAATAGACTTTGAATTCTTGGGAAACCTGAGCGGCGATCCTTACACTCTTCATACCAATGTATTCAGCCAAGGCAAAGGAGAAAGAGAGCAACAATTCCATCTTTGGTTTGACCCAACCGCTGATTTCCATACATACTCAATCCTTTGGAACCCCCAACGCATTATCTTTTCTGTAGATGGCACACCAATCAGAGAGTTCAAGAACGCCGAGTCTATTGGCGTACCATACCCAAAGAAACAACCGATGAGGATATACTCTAGCCTATGGAATGCCGATGATTGGGCGACAAGAGGTGGGCTCGTGAAGACTGACTGGACTCAAGCTCCTTTCACTGCGTCTTACAGAAACTTCAAAGCCGAAGCTTCAAACAACGGGGCATGGTTCACGGAAGCGTTGGACTCGACGAGCCAGGGGAGGTTGAAATGGGTGCAAAAGAACTATATGATCTACAATTACTGCACAGACAAAAAGAGATATCCTCAAGGCCTACCCAAAGAATGCAGCATGTACTAA

Network for GWHGAAZE024658

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00722.22	Glyco_hydro_16	30	208	2.30E-63
PF06955.13	XET_C	225	269	6.30E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14504	TCH4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006073	biological_process	cellular glucan metabolic process
GO:0010411	biological_process	xyloglucan metabolic process
GO:0042546	biological_process	cell wall biogenesis
GO:0005618	cellular_component	cell wall
GO:0048046	cellular_component	apoplast
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	85.157
	SRR3591706	second leaf	1.538
	SRR3591707	mature leaf	3.668
	SRR3591708	Shoot apex	20.374
	SRR3591709	Stem	62.180
	SRR3591710	White floral bud	10.642
	SRR3591711	White flower	28.366
	SRR3591712	Green floral bud	4.177
	SRR3591713	Yellow flower	199.749
SRP173429	SRR8316895	Juvenile bud stage	16.961
	SRR8316896	Juvenile bud stage	19.101
	SRR8316897	Juvenile bud stage	55.971
	SRR8316894	Third green stage	0.846
	SRR8316900	Third green stage	1.437
	SRR8316901	Third green stage	13.218
	SRR8316898	Complete white stage	0.674
	SRR8316899	Complete white stage	8.498
	SRR8316903	Complete white stage	4.917
	SRR8316902	Silver flowering stage	14.542
	SRR8316904	Silver flowering stage	8.346
	SRR8316905	Silver flowering stage	1.582
	SRR8316906	Gold flowering stage	7.676
	SRR8316907	Gold flowering stage	25.581
	SRR8316908	Gold flowering stage	52.471
SRP132670	SRR6706286	Control	6.477
	SRR6706287	Light intensity 50%	4.092
	SRR6706288	Light intensity 20%	2.373
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.371
	CNS0095593	Slightly white alabastrum(diploid) 2	16.640
	CNS0095594	Slightly white alabastrum(diploid) 3	14.201
	CNS0095595	Whole white alabastrum(diploid) 2	16.094
	CNS0095596	Whole white alabastrum(diploid) 3	0.613
	CNS0095597	Whole white alabastrum(diploid) 4	10.117
	CNS0095598	Silvery flower (diploied) 1	61.568
	CNS0095599	Silvery flower (diploied) 2	29.303
	CNS0095600	Silvery flower (diploied) 3	19.566
	CNS0095601	Golden flower (diploid) 1	39.292
	CNS0095602	Golden flower (diploid) 2	35.772
	CNS0095603	Golden flower (diploid) 3	34.270
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.550
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.038
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.498
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.771
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.837
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.490
	CNS0095610	Silvery flower (tetraploid) 1	29.628
	CNS0095611	Silvery flower (tetraploid) 2	11.331
	CNS0095612	Silvery flower (tetraploid) 3	8.371
	CNS0095613	Golden flower (tetraploid) 1	24.591
	CNS0095614	Golden flower (tetraploid) 2	52.984
	CNS0095615	Golden flower (tetraploid) 3	13.430
CRA001975	CRR073297	Stem 1	10.164
	CRR073298	Stem 2	10.604
	CRR073299	Stem 3	4.233
	CRR073300	Leaf 1	5.146
	CRR073301	Leaf 2	7.406
	CRR073302	Leaf 3	4.620
	CRR073303	Juvenile bud 1	2.540
	CRR073304	Juvenile bud 2	13.733
	CRR073305	Juvenile bud 3	9.321
	CRR073306	Third green 1	19.207
	CRR073307	Third green 2	17.735
	CRR073308	Third green 3	21.410
	CRR073309	Second white 1	4.906
	CRR073310	Second white 2	4.473
	CRR073311	Second white 3	8.696
	CRR073312	Silver flowering 1	9.526
	CRR073313	Silver flowering 2	5.919
	CRR073314	Silver flowering 3	11.618
	CRR073315	Gold flowering 1	129.526
	CRR073316	Gold flowering 2	287.613
	CRR073317	Gold flowering 3	104.857
	CRR073318	Tawny withering 1	289.754
	CRR073319	Tawny withering 2	247.546
	CRR073320	Tawny withering 3	457.082