Gene detail

Detail information of GWHGAAZE024673

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15547.1	3.3231E-116	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8RXX9\|ATL6_ARATH	2E-82	E3 ubiquitin-protein ligase ATL6 (Precursor)
trEMBL	tr\|A0A068V4P6\|A0A068V4P6_COFCA	1E-116	Coffea canephora DH200=94 genomic scaffold, scaffold_100 {ECO:0000313\|EMBL:CDP15547.1}
TAIR10	AT3G05200.1	2E-62	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47393068	47395780	-
GWHAAZE00000007	mRNA	47393068	47395780	-
GWHAAZE00000007	exon	47394920	47395780	-
GWHAAZE00000007	exon	47393068	47393671	-
GWHAAZE00000007	CDS	47394920	47395780	-
GWHAAZE00000007	CDS	47393393	47393671	-
GWHAAZE00000007	three_prime_UTR	47393068	47393392	-

Transcript Sequence
>GWHTAAZE024707 ATGAAAAACCACACCAGCCCTCCGATCGTCGGCGCTCGAAACTTAATTATCTCACTCTCTCTTCTACTGCTCCTCTCTTCATCGATCCCCACAGTAAGATCTCAATCCGGGTCCGATGGATCCGGGTCTGCTCAGTACCCGTACGCCCGGTTCAGCCCGTCGATGGCGATAATAATCGCTGTCCTCGTCACTGCTCTCTTCTTCATGGGATTCTTCTCCATCTACATCCGCCGCTGCGCTGACTCCAACTCCGGCGGCAGCATCCGCCCCATCCTCTCCATCCGCCGACGGGCTGCGGCGGCGCGTGGACTAGACGCGGAAGTAATAAACACTTTTCCCACTTTCGGATACGACGTCGTTAGGGGGCTTAATATTGGTAAGGGCGCCCTAGAATGCGCCGTTTGTCTTAACGAGTTCGAAGAGAACGAAACGCTGCGTTTAATCCCTAAATGCGATCACGTGTTTCACCCAGAGTGTATTGACGCGTGGCTAGAGTCGCACGTGACTTGTCCGGTTTGTCGGGCCAACTTGGTTCCTCAACCAGGTGAGTCGACTGACTTGCCGAACGAGTTAAATCCTGAGTTGGATAATGATAATGAGGAGCAGAACGATGGCGTTTCGGTTCGGGTTAGTGATGACTATGAAGTGAATAATAATCCACGTGTCGCTTCAATGAATAGGAACTTGAGTTGGAAATTTGGACGGCCAAGAATTTTTGAACGGTTTAGGTCGCACTCGACCGGGCATTCACTGGTTCAACCCGGAGAGAATTTGGACCGGTATACTCTCCGGTTGCCTGAGGATGTAAGGAAGCAAGTGATGCGAAGAGCATTTTTTAATCGGACGGCGAGCAATGTGGTGATTTTACCAAGAGAAGGGAGTTCGAAGAGGGGTTTCCGGACCGGAGAGGCAAGTAGTAGAGGGAGATCATACCGGCGCCTCGAGAGTTTGGACCGAGTTGTGAGGTCTGAGCGGTGGGGAAAGTTGCCTTCGTTCTTGTCCAGGGCTTTGTCAATGAAGTCCCCGAAAATGAAGGGCGAGTCGTCGTCTTCGGCTCCGGTGGTGGACGATACGCCGTTAAACTCTCGGCGGCCAAGGTCCGACGAGTCCGGTCCGGTTTTGGCTGACTCCCCGGTTTAAATATAGCGTAAGTTTAAAGTTTGGTCGTGGTGGGGACCACGTCGTGGGTTCTTACTGGGTGGATTAAAATGTTAAGGTCGTTTGTAAGGGGCGCACAATTGCAAAAGTTGGCCTTCGACGGTACCTACTTTTCAAAAGTCTTATACGATTGTTATATATCCATCCTCTTAGATTCTTTTTTTATTATGTTAAATTCTTCAGTTTTTTATATAAATAATTAACAATTTTGTCAATGTGTACTTTAATTTTATTATTTGTACATTCTTTGTAAATTAATGTGATCTTTCGCTGTATGATATCTAAAGATACATAAATTTTCGTAGAA

Network for GWHGAAZE024673

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	131	174	2.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.256
	SRR3591706	second leaf	8.983
	SRR3591707	mature leaf	23.493
	SRR3591708	Shoot apex	8.348
	SRR3591709	Stem	49.556
	SRR3591710	White floral bud	37.632
	SRR3591711	White flower	57.371
	SRR3591712	Green floral bud	15.967
	SRR3591713	Yellow flower	76.513
SRP173429	SRR8316895	Juvenile bud stage	21.765
	SRR8316896	Juvenile bud stage	23.756
	SRR8316897	Juvenile bud stage	19.166
	SRR8316894	Third green stage	6.169
	SRR8316900	Third green stage	14.572
	SRR8316901	Third green stage	22.510
	SRR8316898	Complete white stage	16.707
	SRR8316899	Complete white stage	67.013
	SRR8316903	Complete white stage	21.637
	SRR8316902	Silver flowering stage	22.972
	SRR8316904	Silver flowering stage	26.288
	SRR8316905	Silver flowering stage	16.648
	SRR8316906	Gold flowering stage	89.290
	SRR8316907	Gold flowering stage	81.447
	SRR8316908	Gold flowering stage	109.645
SRP132670	SRR6706286	Control	25.953
	SRR6706287	Light intensity 50%	26.886
	SRR6706288	Light intensity 20%	21.310
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.482
	CNS0095593	Slightly white alabastrum(diploid) 2	51.127
	CNS0095594	Slightly white alabastrum(diploid) 3	37.163
	CNS0095595	Whole white alabastrum(diploid) 2	33.531
	CNS0095596	Whole white alabastrum(diploid) 3	7.756
	CNS0095597	Whole white alabastrum(diploid) 4	28.113
	CNS0095598	Silvery flower (diploied) 1	78.165
	CNS0095599	Silvery flower (diploied) 2	79.988
	CNS0095600	Silvery flower (diploied) 3	64.559
	CNS0095601	Golden flower (diploid) 1	103.598
	CNS0095602	Golden flower (diploid) 2	114.145
	CNS0095603	Golden flower (diploid) 3	105.128
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.956
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.176
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.787
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.529
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.743
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.687
	CNS0095610	Silvery flower (tetraploid) 1	38.400
	CNS0095611	Silvery flower (tetraploid) 2	28.705
	CNS0095612	Silvery flower (tetraploid) 3	25.102
	CNS0095613	Golden flower (tetraploid) 1	50.738
	CNS0095614	Golden flower (tetraploid) 2	48.848
	CNS0095615	Golden flower (tetraploid) 3	68.334
CRA001975	CRR073297	Stem 1	13.846
	CRR073298	Stem 2	11.762
	CRR073299	Stem 3	14.096
	CRR073300	Leaf 1	30.698
	CRR073301	Leaf 2	36.568
	CRR073302	Leaf 3	17.286
	CRR073303	Juvenile bud 1	30.596
	CRR073304	Juvenile bud 2	35.274
	CRR073305	Juvenile bud 3	46.480
	CRR073306	Third green 1	51.228
	CRR073307	Third green 2	49.476
	CRR073308	Third green 3	36.521
	CRR073309	Second white 1	58.855
	CRR073310	Second white 2	62.569
	CRR073311	Second white 3	54.129
	CRR073312	Silver flowering 1	114.265
	CRR073313	Silver flowering 2	116.277
	CRR073314	Silver flowering 3	93.571
	CRR073315	Gold flowering 1	37.458
	CRR073316	Gold flowering 2	52.958
	CRR073317	Gold flowering 3	48.631
	CRR073318	Tawny withering 1	38.699
	CRR073319	Tawny withering 2	88.801
	CRR073320	Tawny withering 3	40.992