Gene detail

Detail information of GWHGAAZE024674

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006375773.1	2.90548E-86	hypothetical protein POPTR_0013s02680g [Populus trichocarpa]
Swissprot	tr\|Q9C7T4\|BH096_ARATH	2E-62	Transcription factor bHLH96
trEMBL	tr\|U5FRE6\|U5FRE6_POPTR	1E-86	Uncharacterized protein {ECO:0000313\|EMBL:ERP53570.1}
TAIR10	AT1G72210.1	1E-47	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47466741	47468977	+
GWHAAZE00000007	mRNA	47466741	47468977	+
GWHAAZE00000007	exon	47466741	47467205	+
GWHAAZE00000007	exon	47468564	47468977	+
GWHAAZE00000007	CDS	47466741	47467205	+
GWHAAZE00000007	CDS	47468564	47468977	+

Transcript Sequence
>GWHTAAZE024708 ATGGCAGTAGAAGCTATGATGTTTGAAAATATGTTTAATTACAGTAACAACAAAGATCTCCACTACTTGTTAGGATTCAACTGGAGCTGTGAAGAAGAACAAGAAGAGGAGGAGAAATCAGTGTCCCTCAATTTTCTCGAGAACCAAACAGAAAATTTCCACATTGGAGATTGGAATTCCCCGGGGGGTGGTTCCACTTTGGACCAATGGGGTTCCAGCTCATCATCATTAGAGCCCGAAATCATGGGTAACACGACTGTTACCGAGGAGTTCCCATCATGGGATAATAACTCCACGGACACCTCAGCTACACCGAAACGACGTAGATCGAGAAGGAAGAAGAACATCGAAGAGATTGAGAATCAGAGGATGACTCACATTAATGTTGAGCGGAATAGAAGGAAGCAAATGAATGATTATCTCTCACATCTCCGATCACTCATGCCGGACTCTTATGTTCAAAAGGGTGATCAAGCATCAATAATTGGTGGTGCCATCAACTATGTCAAAGAGCTAGAGCAACAACTACACTTCCTCAATGGTCACAAAAATATGAACAACCAAATGAATTACACCAATACTTCTGGTTCATCATCATCTCCATCGCCCTTTGCTGAGTTCTTCAAATTCCCACAGTACTCGACGAGTTCAACTCAGCTTGTGTACAAGTCGACAGAAACCGACTCAACTGCCATGGGTGACATAGAAGTGAGCTTGGCTGAGAGCCATGCCACCCTCAAAATAAGCACAAAACGGCAGCCAAAGCTATTAGTTAAAATGGTTTCTGGTTTAACAAGCCTAAGGCTCACTGTTCTCCATCTTAATGTTACTACTGTTGATCAACTTGTTCTCTATTCTCTCACCGTCAAGGTTAGTTAA

Network for GWHGAAZE024674

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	122	173	7.00E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.883
	SRR3591706	second leaf	1.644
	SRR3591707	mature leaf	0.548
	SRR3591708	Shoot apex	2.108
	SRR3591709	Stem	13.038
	SRR3591710	White floral bud	20.091
	SRR3591711	White flower	5.307
	SRR3591712	Green floral bud	14.693
	SRR3591713	Yellow flower	0.252
SRP173429	SRR8316895	Juvenile bud stage	1.176
	SRR8316896	Juvenile bud stage	1.820
	SRR8316897	Juvenile bud stage	0.801
	SRR8316894	Third green stage	2.331
	SRR8316900	Third green stage	8.208
	SRR8316901	Third green stage	7.981
	SRR8316898	Complete white stage	4.083
	SRR8316899	Complete white stage	5.253
	SRR8316903	Complete white stage	6.665
	SRR8316902	Silver flowering stage	0.107
	SRR8316904	Silver flowering stage	0.355
	SRR8316905	Silver flowering stage	0.292
	SRR8316906	Gold flowering stage	0.137
	SRR8316907	Gold flowering stage	0.484
	SRR8316908	Gold flowering stage	0.203
SRP132670	SRR6706286	Control	6.386
	SRR6706287	Light intensity 50%	8.421
	SRR6706288	Light intensity 20%	8.003
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.866
	CNS0095593	Slightly white alabastrum(diploid) 2	4.079
	CNS0095594	Slightly white alabastrum(diploid) 3	1.988
	CNS0095595	Whole white alabastrum(diploid) 2	3.408
	CNS0095596	Whole white alabastrum(diploid) 3	3.470
	CNS0095597	Whole white alabastrum(diploid) 4	5.582
	CNS0095598	Silvery flower (diploied) 1	12.003
	CNS0095599	Silvery flower (diploied) 2	13.714
	CNS0095600	Silvery flower (diploied) 3	2.153
	CNS0095601	Golden flower (diploid) 1	10.799
	CNS0095602	Golden flower (diploid) 2	3.892
	CNS0095603	Golden flower (diploid) 3	3.433
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.742
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.212
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.593
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.950
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.540
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.268
	CNS0095610	Silvery flower (tetraploid) 1	0.288
	CNS0095611	Silvery flower (tetraploid) 2	3.080
	CNS0095612	Silvery flower (tetraploid) 3	0.739
	CNS0095613	Golden flower (tetraploid) 1	0.080
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	4.314
	CRR073298	Stem 2	6.014
	CRR073299	Stem 3	5.958
	CRR073300	Leaf 1	11.699
	CRR073301	Leaf 2	11.197
	CRR073302	Leaf 3	9.322
	CRR073303	Juvenile bud 1	11.282
	CRR073304	Juvenile bud 2	25.399
	CRR073305	Juvenile bud 3	11.938
	CRR073306	Third green 1	7.778
	CRR073307	Third green 2	6.205
	CRR073308	Third green 3	6.962
	CRR073309	Second white 1	0.308
	CRR073310	Second white 2	0.258
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.077
	CRR073314	Silver flowering 3	0.697
	CRR073315	Gold flowering 1	0.011
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.106
	CRR073318	Tawny withering 1	35.235
	CRR073319	Tawny withering 2	20.815
	CRR073320	Tawny withering 3	32.781