Detail information of GWHGAAZE024679


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002276425.12.4666E-121PREDICTED: mediator-associated protein 1 [Vitis vinifera]
Swissprottr|Q9SB42|MDA1_ARATH2E-16Mediator-associated protein 1
trEMBLtr|A5B455|A5B455_VITVI2E-118Putative uncharacterized protein {ECO:0000313|EMBL:CAN65204.1}
TAIR10AT5G28040.14E-63DNA-binding storekeeper protein-related transcriptional regulator

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4752978047530793-
GWHAAZE00000007mRNA4752978047530793-
GWHAAZE00000007exon4752978047530793-
GWHAAZE00000007CDS4752978047530793-
Transcript Sequence

Network for GWHGAAZE024679

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0049


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04504.15DUF573471441.70E-33
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGeBP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.776
SRR3591706second leaf42.992
SRR3591707mature leaf53.017
SRR3591708Shoot apex47.634
SRR3591709Stem61.654
SRR3591710White floral bud86.858
SRR3591711White flower109.498
SRR3591712Green floral bud68.503
SRR3591713Yellow flower78.775
SRP173429 SRR8316895Juvenile bud stage 32.137
SRR8316896Juvenile bud stage 46.073
SRR8316897Juvenile bud stage 20.223
SRR8316894Third green stage 20.809
SRR8316900Third green stage 54.153
SRR8316901Third green stage 54.329
SRR8316898Complete white stage 36.686
SRR8316899Complete white stage 86.319
SRR8316903Complete white stage 57.311
SRR8316902Silver flowering stage35.323
SRR8316904Silver flowering stage43.771
SRR8316905Silver flowering stage21.206
SRR8316906Gold flowering stage 64.185
SRR8316907Gold flowering stage 61.376
SRR8316908Gold flowering stage 73.942
SRP132670SRR6706286Control48.637
SRR6706287Light intensity 50%52.884
SRR6706288Light intensity 20%53.545
CNP0000432CNS0095592Slightly white alabastrum(diploid) 148.401
CNS0095593Slightly white alabastrum(diploid) 244.325
CNS0095594Slightly white alabastrum(diploid) 351.541
CNS0095595Whole white alabastrum(diploid) 239.682
CNS0095596Whole white alabastrum(diploid) 340.587
CNS0095597Whole white alabastrum(diploid) 443.820
CNS0095598Silvery flower (diploied) 151.796
CNS0095599Silvery flower (diploied) 251.049
CNS0095600Silvery flower (diploied) 370.108
CNS0095601Golden flower (diploid) 145.640
CNS0095602Golden flower (diploid) 269.964
CNS0095603Golden flower (diploid) 364.473
CNS0095604Slightly white alabastrum(tetraploid) 151.416
CNS0095605Slightly white alabastrum(tetraploid) 238.731
CNS0095606Slightly white alabastrum(tetraploid) 364.573
CNS0095607Whole white alabastrum(tetraploid) 135.009
CNS0095608Whole white alabastrum(tetraploid) 230.820
CNS0095609Whole white alabastrum(tetraploid) 347.824
CNS0095610Silvery flower (tetraploid) 170.956
CNS0095611Silvery flower (tetraploid) 262.172
CNS0095612Silvery flower (tetraploid) 377.585
CNS0095613Golden flower (tetraploid) 156.253
CNS0095614Golden flower (tetraploid) 264.386
CNS0095615Golden flower (tetraploid) 373.843
CRA001975CRR073297Stem 178.163
CRR073298Stem 280.940
CRR073299Stem 3110.013
CRR073300Leaf 185.709
CRR073301Leaf 286.776
CRR073302Leaf 3108.486
CRR073303Juvenile bud 1108.876
CRR073304Juvenile bud 2132.677
CRR073305Juvenile bud 3103.691
CRR073306Third green 1150.261
CRR073307Third green 2140.328
CRR073308Third green 3139.533
CRR073309Second white 1106.853
CRR073310Second white 2108.559
CRR073311Second white 395.685
CRR073312Silver flowering 198.139
CRR073313Silver flowering 297.799
CRR073314Silver flowering 391.534
CRR073315Gold flowering 181.327
CRR073316Gold flowering 2105.206
CRR073317Gold flowering 385.417
CRR073318Tawny withering 1106.251
CRR073319Tawny withering 2101.847
CRR073320Tawny withering 3106.990