Gene detail

Detail information of GWHGAAZE024698

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO62872.1	3.40999E-42	hypothetical protein CISIN_1g004418mg [Citrus sinensis]
Swissprot	tr\|Q8VYZ0\|ORTH2_ARATH	5E-39	E3 ubiquitin-protein ligase ORTHRUS 2
trEMBL	tr\|A0A067FHD9\|A0A067FHD9_CITSI	1E-42	Uncharacterized protein {ECO:0000313\|EMBL:KDO62872.1}
TAIR10	AT1G57820.2	4E-33	Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47807039	47809000	+
GWHAAZE00000007	mRNA	47807039	47809000	+
GWHAAZE00000007	exon	47807039	47807085	+
GWHAAZE00000007	exon	47807759	47807905	+
GWHAAZE00000007	exon	47808151	47808385	+
GWHAAZE00000007	exon	47808557	47809000	+
GWHAAZE00000007	CDS	47807039	47807085	+
GWHAAZE00000007	CDS	47807759	47807905	+
GWHAAZE00000007	CDS	47808151	47808385	+
GWHAAZE00000007	CDS	47808557	47809000	+

Transcript Sequence
>GWHTAAZE024732 TCCTATAAAGAGAAGCGGTCTTCCGATGTCCCAGAGGATGGGTGTCGTAATCATGGTTTGAACTTCACGAGGAAGAAGCTCACTGGATGTGGAAAAAAAAAACCACCAGCTAGCAAAAAACAAGTAACTAAACGAAGCCCTGATGATAGCAAAAAACTTTTGAAAGGTTTGTCCTCCTACCTACTCTTTTTTCGTAATATGGCCTTTTGTGCAGAATTCAGTTGCCTTCTTTGTAAAAAGGTGATGGTCCTTCCCCTCACAACGCCTTGTGCTCATAACTTTTGCAAGCCTTGTCTAGAAGGGGCATTTGCTGGCCAGACTTTCACAAAAGAGAGATCCCGAGGTGGACGTATGCTTCGCACCCAAAAGTATATCATGAAGTGCCCTTCATGCACCAATGATATATCTGAATATCTTCAAAACCCAGAGGTAAATAGAGAAGTAATGGAGGTTATACAGAAACTCCTAAACGAAACTGAGAATGGTAACATTATGGAGGCGTTCGACATGGAGGAAGATCTCCCTGCTACTGAAATCGAGGGCGTGGATGGTCAGTCCGAGAGTGAAGAGCCAAATCCTACGGCTGAATGGGCTATTAAGCAGAAGGAAGTTGATCCTAACCATCCAATCGAGCACAAGCCGAGGAGGACTAATAAGCGAAGGAAAACTAATGTTGAGAAGGAGAAAGCATTTCCCAGGAGAACCTTGATGATGGCGCAACAGAGGCTGGTCCTACTACTAAGAAGAAGAAAACTAGATGTGGGGATCACAGAGAGAGACCCACGGGAGGATCTAAGGCCAAGAGCAAGAAAGCTGCAGATGAAGGAGATGATTCACCTTCGCGCCTTACAGAGCCAGCCGTGGGGAAAGTGA

Network for GWHGAAZE024698

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13445.7	zf-RING_UBOX	75	118	7.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.125
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.006
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.004
	SRR8316896	Juvenile bud stage	0.006
	SRR8316897	Juvenile bud stage	0.778
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.004
	SRR8316901	Third green stage	0.006
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.004
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.010
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.003
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.003
	SRR6706288	Light intensity 20%	0.003
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.003
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.001
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.004
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.002
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.006
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.070
	CRR073301	Leaf 2	0.144
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000