Gene detail

Detail information of GWHGAAZE024707

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI34238.3	0	unnamed protein product [Vitis vinifera]
COG	YP_003887783.1	7E-24	WD40 repeat-containing protein
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	8E-16	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A0A068UJ71\|A0A068UJ71_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_34 {ECO:0000313\|EMBL:CDP08595.1}
TAIR10	AT3G05090.2	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	47949272	47969785	+
GWHAAZE00000007	mRNA	47949272	47969785	+
GWHAAZE00000007	exon	47949272	47949289	+
GWHAAZE00000007	exon	47950820	47950885	+
GWHAAZE00000007	exon	47950983	47951072	+
GWHAAZE00000007	exon	47951536	47951841	+
GWHAAZE00000007	exon	47952522	47952619	+
GWHAAZE00000007	exon	47955501	47955536	+
GWHAAZE00000007	exon	47956789	47956909	+
GWHAAZE00000007	exon	47957316	47957552	+
GWHAAZE00000007	exon	47963653	47963748	+
GWHAAZE00000007	exon	47964116	47964181	+
GWHAAZE00000007	exon	47964400	47964438	+
GWHAAZE00000007	exon	47964529	47964663	+
GWHAAZE00000007	exon	47966563	47966933	+
GWHAAZE00000007	exon	47967656	47967749	+
GWHAAZE00000007	exon	47968205	47968334	+
GWHAAZE00000007	exon	47969625	47969785	+
GWHAAZE00000007	CDS	47949272	47949289	+
GWHAAZE00000007	CDS	47950820	47950885	+
GWHAAZE00000007	CDS	47950983	47951072	+
GWHAAZE00000007	CDS	47951536	47951841	+
GWHAAZE00000007	CDS	47952522	47952619	+
GWHAAZE00000007	CDS	47955501	47955536	+
GWHAAZE00000007	CDS	47956789	47956909	+
GWHAAZE00000007	CDS	47957316	47957552	+
GWHAAZE00000007	CDS	47963653	47963748	+
GWHAAZE00000007	CDS	47964116	47964181	+
GWHAAZE00000007	CDS	47964400	47964438	+
GWHAAZE00000007	CDS	47964529	47964663	+
GWHAAZE00000007	CDS	47966563	47966933	+
GWHAAZE00000007	CDS	47967656	47967749	+
GWHAAZE00000007	CDS	47968205	47968334	+
GWHAAZE00000007	CDS	47969625	47969785	+

Transcript Sequence
>GWHTAAZE024741 ATGGAAGAATGGAATGAGGTCAATGATGCTGTCCTTGCAGGTGGTAATACACTTATTTCCTGCTCATCAGATACTACTGTCAAGGCATGGAATTGCTTATCTGATGGAACTTGCATCAAGACTTTTCGTCAACACTCTGATTATGTTACTTGTCTTGCTGCTGGAGAAAAGAATAGCCATATTGTTGCCTCTGGTGGCCTTGGTGGGGAGGTGTTCATATGGGATCTCGAAGCTGCACTTGCTCCGGTGACTAAATCAAGCGATGAAACTGAGGATGATAGTTCAAATGGTATCAATGGCTCGGGAAATTCACTACCCATTAGTAGTCTACGTAATATCTCCACAAGCAACAGCATTTCTTTGCACACAGCCCAGCCCCAAGGATATGTACCAATTGCTGCCAAAGGCCATAAGGAATCGGTTTATGCATTGGCAATGAATGATAGCGGGAACCTTCTTGTTTCTGGCGGAACTGAGAAGGTTGTGCGTGTTTGGGACCCAAGAAATGGTTCAAAGACCATGAAGCTTAGAGGGCATACTGATAATATTAGGTCCCTGCTGCTGGACTCTACTGGCAGGTTCTGTTTATCAGGATCGTCAGATTCCATGATCAGACTATGGGATCTTGGTCAGCAACGGTGCATACATTCGTATGCTGTGCATACAGATTCTGTTTGGGCCCTTGCTAGCACCCCGTCATTTAGTCATGTTTACAGCGGTGGAAGAGATCTTTCTTTGTACTTGACAGATTTGGCAACAAGGGAAAGCATATTGCTTTGCATGAAGGAACATCCTATTCAGCAATTAGCATTGCATGATGATGGTATATGGGTTGCAACCACAGATTCTTCTGTACACAGATGGCCAGCTGAAGCTCGTGATCCTCAGAAGGTTTTTCAAAGAGGCGGCTCGTTTTTGGCTGGAAACTTGTCGTTTTCAAGGGCAAGAGCTTCCTTAGAAGGATCTACTCCTGTTCCTGTTTATAGAGAACCCTCCTTTAGCATTACTGGTACTCCAGGAATAGTGCAGCATGAGATTTTGAACAATAGGAGGCATGTCCTTACTAAGGATACTGCTGGTTCATTGAAGCTGTGGGAGATTACACGGGGCATTGTGGTCGAGGACTATGGGGAGGTTCCATTTGATAAGAAGAAGGAAGATCTATTTGAGATGGTAAACATTCCTGCATGGTTCACTATAGATACAAGGCTTGGAAGCTTGTCTGTACATTTGGATACACCACAATGCTTTTCCGCAGAGATGTATTCTGCTGATCTTAACATTATTGGGAAACCCGAGGATGACAAGATTAATTTGGGAAGAGAAACCCTAAAAGGTTTGCTGTCTCATTGGCTAACAAAAAGAAGGCAGAGATTTGGATCCCAAGCTCCAGCCAATGGAGATGTTTCATCTCCAAAGGATATCACTACTAGTAGAAGCCATATACTTTCAAGAGTTGAGGTAGATGGAACTACTAATGCCGAAAACGATTCTGTGGTATATCCTCCTTTTCAATTCTCAGCGGATTCTCCTCCTTCGATTATTACCGATGGCTCTCAAAGCGGTCCATGGAGAAAGAAAATTACAGACCTAGATGGAACTGAAGATGAGAAGGACTTTCCCTTTTGGATTCTGGAGTGCATGTTGAATAATCGCATGCCTCCCAGGGAAAATACCAAGTGCAGCTTTTATTTACACGCTTGTGAAGGTTCGTCCTTCCAGATCCTCACTCAAGGGAAATTGAGTGCACCTCGTATATTGAGAATACATAAAGTTGTTAACTATGTTGTAGAGAAGATGGTTCTCGACAAGCCATTAGATAGTTTACATACCGATGGGCATACACAGAAGCCTTGGCAAAAGCTTAAGCCTTCTATAGAGATCTTGTGCAATGACCAGGCGATTTCTGAAGATTCCTTTTACTATGTGAAATATAAAAAAAAGTGGGTTGTGGTTCATTTTCAGGTCTTATCCCCTGAAATGAGCTTAGCCACTGTGCGGGCTTATATATGGAAGAAACCTGAGGACCTCGTCCTCAACTATCGACTTGTACAGGGAAGATGA

Network for GWHGAAZE024707

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	36	75	0.00052
PF00400.33	WD40	135	166	0.00044
PF00400.33	WD40	172	208	8.00E-05
PF11816.9	DUF3337	535	637	9.60E-17

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K15361	WDR48, UAF1	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.197
	SRR3591706	second leaf	12.004
	SRR3591707	mature leaf	14.215
	SRR3591708	Shoot apex	14.903
	SRR3591709	Stem	18.617
	SRR3591710	White floral bud	21.257
	SRR3591711	White flower	25.219
	SRR3591712	Green floral bud	21.439
	SRR3591713	Yellow flower	27.009
SRP173429	SRR8316895	Juvenile bud stage	13.157
	SRR8316896	Juvenile bud stage	17.384
	SRR8316897	Juvenile bud stage	9.114
	SRR8316894	Third green stage	7.677
	SRR8316900	Third green stage	23.567
	SRR8316901	Third green stage	21.019
	SRR8316898	Complete white stage	9.970
	SRR8316899	Complete white stage	24.157
	SRR8316903	Complete white stage	13.773
	SRR8316902	Silver flowering stage	10.086
	SRR8316904	Silver flowering stage	15.018
	SRR8316905	Silver flowering stage	6.695
	SRR8316906	Gold flowering stage	26.132
	SRR8316907	Gold flowering stage	23.228
	SRR8316908	Gold flowering stage	25.164
SRP132670	SRR6706286	Control	20.897
	SRR6706287	Light intensity 50%	19.891
	SRR6706288	Light intensity 20%	21.177
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.539
	CNS0095593	Slightly white alabastrum(diploid) 2	9.601
	CNS0095594	Slightly white alabastrum(diploid) 3	12.057
	CNS0095595	Whole white alabastrum(diploid) 2	11.529
	CNS0095596	Whole white alabastrum(diploid) 3	11.841
	CNS0095597	Whole white alabastrum(diploid) 4	12.971
	CNS0095598	Silvery flower (diploied) 1	15.990
	CNS0095599	Silvery flower (diploied) 2	10.816
	CNS0095600	Silvery flower (diploied) 3	23.243
	CNS0095601	Golden flower (diploid) 1	11.425
	CNS0095602	Golden flower (diploid) 2	22.597
	CNS0095603	Golden flower (diploid) 3	23.192
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.080
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.780
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.447
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.636
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.574
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.913
	CNS0095610	Silvery flower (tetraploid) 1	25.811
	CNS0095611	Silvery flower (tetraploid) 2	27.928
	CNS0095612	Silvery flower (tetraploid) 3	34.105
	CNS0095613	Golden flower (tetraploid) 1	15.388
	CNS0095614	Golden flower (tetraploid) 2	23.956
	CNS0095615	Golden flower (tetraploid) 3	27.771
CRA001975	CRR073297	Stem 1	19.584
	CRR073298	Stem 2	16.269
	CRR073299	Stem 3	13.583
	CRR073300	Leaf 1	20.017
	CRR073301	Leaf 2	17.277
	CRR073302	Leaf 3	13.734
	CRR073303	Juvenile bud 1	12.772
	CRR073304	Juvenile bud 2	11.795
	CRR073305	Juvenile bud 3	17.696
	CRR073306	Third green 1	14.418
	CRR073307	Third green 2	10.256
	CRR073308	Third green 3	13.588
	CRR073309	Second white 1	15.979
	CRR073310	Second white 2	15.271
	CRR073311	Second white 3	15.936
	CRR073312	Silver flowering 1	17.667
	CRR073313	Silver flowering 2	20.357
	CRR073314	Silver flowering 3	18.398
	CRR073315	Gold flowering 1	6.095
	CRR073316	Gold flowering 2	13.453
	CRR073317	Gold flowering 3	6.862
	CRR073318	Tawny withering 1	13.384
	CRR073319	Tawny withering 2	11.682
	CRR073320	Tawny withering 3	11.900