Gene detail

Detail information of GWHGAAZE024719

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273273.2	0	PREDICTED: probable nucleolar protein 5-2 [Vitis vinifera]
COG	YP_001191801.1	6E-57	C/D box methylation guide ribonucleoprotein complex aNOP56 subunit
Swissprot	tr\|O04656\|NOP5C_ARATH	0	Putative nucleolar protein 5-3
trEMBL	tr\|F6HTW5\|F6HTW5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58126.1}
TAIR10	AT3G05060.1	0	NOP56-like pre RNA processing ribonucleoprotein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	48131798	48138554	+
GWHAAZE00000007	mRNA	48131798	48138554	+
GWHAAZE00000007	exon	48131798	48131875	+
GWHAAZE00000007	exon	48133415	48133456	+
GWHAAZE00000007	exon	48133883	48134062	+
GWHAAZE00000007	exon	48134447	48134611	+
GWHAAZE00000007	exon	48135178	48135378	+
GWHAAZE00000007	exon	48136336	48136833	+
GWHAAZE00000007	exon	48137405	48137539	+
GWHAAZE00000007	exon	48138147	48138554	+
GWHAAZE00000007	CDS	48131798	48131875	+
GWHAAZE00000007	CDS	48133415	48133456	+
GWHAAZE00000007	CDS	48133883	48134062	+
GWHAAZE00000007	CDS	48134447	48134611	+
GWHAAZE00000007	CDS	48135178	48135378	+
GWHAAZE00000007	CDS	48136336	48136833	+
GWHAAZE00000007	CDS	48137405	48137539	+
GWHAAZE00000007	CDS	48138147	48138554	+

Transcript Sequence
>GWHTAAZE024753 ATGCTTGTGTTGTTCGAAACTCCGGCAGGGTTTGCCCTGTTCAAAGTTTTGAACGAAGGGAAGCTCTCCAAAGTTGAGGACTTATGGAAGGAGTTTTCCACAGCTGATACAGCTAGACAGGTTGTGAAGCTAAAAGCTTTCTCCAAGTTTGAGAACACTTCAGAGGCACTGTCAGCAGCTACCTTATTGATTGATAGCAAGCCCAGCAAAGGTCTACGAAAATTCTTACGTGCTCATTGTGATGGTGAAACATTAGCTGTGGCAGATTCTAAGCTTGGAAACTCTATTAAGGAGAAACTTCAAATTGACTGTGTCCACAACAATGCTGTGATGGAACTGATGAGAGGAGTGAGAAGTCAGCTGACTGAACTAATATCTGGTCTAGGTGCCCAAGATTTAGCTCCAATGAGCCTGGGTTTATCTCACAGCTTGTCTAGATACAAGCTTAAATTCAGCCCCGATAAGGTGGATACGATGATCATTCAGGCCATTGGCTTGTTGGATGATCTTGACAAAGAGCTTAACACCTATGCAATGAGGGTTAGGGAATGGTATGGTTGGCATTTTCCAGAACTTGCAAAGATTGTACAAGATAATATCCTTTATGCCAAGACAGTGAAGATGATGGGTGACCGCACAAATGCTGCCAAGCTTGATTTCTCTGAGATATTGCCAGAAGAGATTGAAACAGAACTGAAGGAGGCAGCCATGATTTCCATGGGAACAGAAGTTAGTGACCTCGATCTTACGAACATCAAAGACCTATGCGACCAAGTTCTCTCTCTTGCAGAATACAGAGCTCAACTCTACGATTACTTGAAGAGCAGAATGAACACCATTGCTCCGAATCTCACAGCACTTGTTGGAGAGCTCGTTGGGGCTCGCCTAATTGCCCATGGGGGCAGCTTGTTGAATCTTGCTAAACAGCCTGGTAGTACAGTTCAGATTCTTGGTGCTGAAAAGGCTCTCTTTCGAGCTTTAAAGACGAAGCATGCAACTCCTAAATATGGGCTTATTTACCATGCGTCTCTAATTGGTCAGGCTGCACCAAAACATAAAGGGAAAATTTCGAGATCTCTTGCTGCCAAAACCGCGTTGGCAATTCGATATGATGCTCTTAGTGACGGGCAAGATAATTCTATGGGTCTGGAGAATCGAATCAAGCTCGAAGCAAGGTTAAGGAATCTGGAAGGCAGAGAATTAGGTCGTTCTGCTGGATCGGCTAAAGGCAAACCTAAGATAGAGTTCTACAACAAGGACTTGAAGAGGGGATCAGGGGCATTGGTAACTCCTGCCAAGACATACAATCCCTCGGCGGATTCCGTTCTCGGACGGATAGAATCAACAACTGAGAAAGAGGAGAATACGGTCCAACAGAAGAGGAAGAATGAAGAGGAGGCTCCAGTTATTGACGAAGAGAAGAAAGAGAAAAAGAAAAAGAAAAAAAAGAAGGCTGCTGATGCAGATGAGACGGCATTGCTGAACAACGAGGTTAAAGTTGCAGAGCCAGAAAGTGAAGAGATTGGTAAAAAAGAAAAGAAGAAAAAGAAGAAACGTGTGGCTGAGGATGTTGAGTTGCAAGATGAAGGAGCCGAAGGAGGAAAGAAGAAAAAGAAGAGAAAGCACTCTGAAGTGGAAGCAGAAGAAGCTGAGACCGAGGGCAAGAAGAAAGATAAAAAGAAGAAGAAGAAAAGGAGTGAAGATTGA

Network for GWHGAAZE024719

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08156.14	NOP5NT	2	65	3.50E-20
PF01798.19	Nop	166	394	4.40E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14565	NOP58	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.334
	SRR3591706	second leaf	12.348
	SRR3591707	mature leaf	12.599
	SRR3591708	Shoot apex	51.399
	SRR3591709	Stem	22.646
	SRR3591710	White floral bud	18.041
	SRR3591711	White flower	39.329
	SRR3591712	Green floral bud	31.947
	SRR3591713	Yellow flower	24.676
SRP173429	SRR8316895	Juvenile bud stage	24.307
	SRR8316896	Juvenile bud stage	36.334
	SRR8316897	Juvenile bud stage	18.344
	SRR8316894	Third green stage	13.283
	SRR8316900	Third green stage	30.601
	SRR8316901	Third green stage	23.005
	SRR8316898	Complete white stage	2.425
	SRR8316899	Complete white stage	19.913
	SRR8316903	Complete white stage	7.089
	SRR8316902	Silver flowering stage	6.763
	SRR8316904	Silver flowering stage	8.710
	SRR8316905	Silver flowering stage	3.970
	SRR8316906	Gold flowering stage	17.178
	SRR8316907	Gold flowering stage	15.313
	SRR8316908	Gold flowering stage	19.811
SRP132670	SRR6706286	Control	24.386
	SRR6706287	Light intensity 50%	21.141
	SRR6706288	Light intensity 20%	21.514
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.199
	CNS0095593	Slightly white alabastrum(diploid) 2	54.628
	CNS0095594	Slightly white alabastrum(diploid) 3	60.148
	CNS0095595	Whole white alabastrum(diploid) 2	36.867
	CNS0095596	Whole white alabastrum(diploid) 3	34.747
	CNS0095597	Whole white alabastrum(diploid) 4	27.951
	CNS0095598	Silvery flower (diploied) 1	42.031
	CNS0095599	Silvery flower (diploied) 2	33.424
	CNS0095600	Silvery flower (diploied) 3	20.565
	CNS0095601	Golden flower (diploid) 1	33.815
	CNS0095602	Golden flower (diploid) 2	22.116
	CNS0095603	Golden flower (diploid) 3	22.876
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.748
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.856
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.472
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.635
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.150
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.753
	CNS0095610	Silvery flower (tetraploid) 1	26.114
	CNS0095611	Silvery flower (tetraploid) 2	23.207
	CNS0095612	Silvery flower (tetraploid) 3	14.313
	CNS0095613	Golden flower (tetraploid) 1	14.753
	CNS0095614	Golden flower (tetraploid) 2	22.555
	CNS0095615	Golden flower (tetraploid) 3	10.389
CRA001975	CRR073297	Stem 1	41.695
	CRR073298	Stem 2	35.415
	CRR073299	Stem 3	38.873
	CRR073300	Leaf 1	30.359
	CRR073301	Leaf 2	31.613
	CRR073302	Leaf 3	28.365
	CRR073303	Juvenile bud 1	28.717
	CRR073304	Juvenile bud 2	10.906
	CRR073305	Juvenile bud 3	28.555
	CRR073306	Third green 1	2.267
	CRR073307	Third green 2	3.067
	CRR073308	Third green 3	3.790
	CRR073309	Second white 1	7.394
	CRR073310	Second white 2	11.062
	CRR073311	Second white 3	8.194
	CRR073312	Silver flowering 1	7.037
	CRR073313	Silver flowering 2	9.717
	CRR073314	Silver flowering 3	7.511
	CRR073315	Gold flowering 1	35.950
	CRR073316	Gold flowering 2	35.462
	CRR073317	Gold flowering 3	14.116
	CRR073318	Tawny withering 1	40.336
	CRR073319	Tawny withering 2	49.158
	CRR073320	Tawny withering 3	51.276