Gene detail

Detail information of GWHGAAZE024720

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002272927.1	PREDICTED: protein HASTY 1 [Vitis vinifera]
Swissprot	tr\|Q0WP44\|HASTY_ARATH	Protein HASTY 1
trEMBL	tr\|D7TUS2\|D7TUS2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34247.3}
TAIR10	AT3G05040.1	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	48148364	48169569	+
GWHAAZE00000007	mRNA	48148364	48169569	+
GWHAAZE00000007	exon	48148364	48148489	+
GWHAAZE00000007	exon	48157867	48158010	+
GWHAAZE00000007	exon	48158098	48158178	+
GWHAAZE00000007	exon	48158572	48158641	+
GWHAAZE00000007	exon	48159115	48159185	+
GWHAAZE00000007	exon	48159258	48159421	+
GWHAAZE00000007	exon	48159820	48159891	+
GWHAAZE00000007	exon	48159994	48160219	+
GWHAAZE00000007	exon	48162346	48162408	+
GWHAAZE00000007	exon	48162523	48162801	+
GWHAAZE00000007	exon	48163419	48163532	+
GWHAAZE00000007	exon	48163932	48164058	+
GWHAAZE00000007	exon	48164136	48164305	+
GWHAAZE00000007	exon	48164399	48164500	+
GWHAAZE00000007	exon	48165488	48165591	+
GWHAAZE00000007	exon	48166177	48166468	+
GWHAAZE00000007	exon	48167615	48167859	+
GWHAAZE00000007	exon	48169068	48169569	+
GWHAAZE00000007	CDS	48148364	48148489	+
GWHAAZE00000007	CDS	48157867	48158010	+
GWHAAZE00000007	CDS	48158098	48158178	+
GWHAAZE00000007	CDS	48158572	48158641	+
GWHAAZE00000007	CDS	48159115	48159185	+
GWHAAZE00000007	CDS	48159258	48159421	+
GWHAAZE00000007	CDS	48159820	48159891	+
GWHAAZE00000007	CDS	48159994	48160219	+
GWHAAZE00000007	CDS	48162346	48162408	+
GWHAAZE00000007	CDS	48162523	48162801	+
GWHAAZE00000007	CDS	48163419	48163532	+
GWHAAZE00000007	CDS	48163932	48164058	+
GWHAAZE00000007	CDS	48164136	48164305	+
GWHAAZE00000007	CDS	48164399	48164500	+
GWHAAZE00000007	CDS	48165488	48165591	+
GWHAAZE00000007	CDS	48166177	48166468	+
GWHAAZE00000007	CDS	48167615	48167859	+
GWHAAZE00000007	CDS	48169068	48169569	+

Transcript Sequence
>GWHTAAZE024754 ATGTATCTATCCAATATATTGCAGGTAAAAGCAGGGGATGTACGTGTACTAGCAAACACATCATTTCTTTTAGTCAAGAAAGATTGGTCTTCTGAGATCCGACTGCATGCTTTCAAAATGCTGCAGCATTTAGTGAGGTTGCGATGGGACGAGTTAAGCCCTACTGAGCGAAGGGACTTTGCAAGTGTTGCTCTTGATTTGATGTCTGAAATTGCAAATCCTTGTGAAGAATGGGCTTTAAAAAGTCAAACTGCTGCTCTGGTTGCTGAGATAGTTAGGAGAGAAGGCTTAAGTCTGTGGCAGGAACTACATCCATCCTTAGTTTCCCTTTCCAATAATGGTCCTATACAGGCTTTGCTGGTCTCAATGATGCTACGGTGGCTTCCTGAGGATATTACGGTTCATAATGAAGATTTAGAAGGTGATCGGCGTAGGCTATTGTTACGTGGACTGACTCAATCTTTGCCTGATATTTTGCCTCTGTTGTACACCTTACTTGAGAGGCACGTTGGAGCTGCTCTGAGTGAAGCAGGTAGGCAACAACTGGACATTGCTAAACAGCATGCAGCCACTGTAACAACTACTCAGAATGCTATTAATGCTTATGCTGAGTGGGCTCCCTTGCCCGATCTTTCAAAATATGGCATAATTCATGGTTGTGGTTTCTTACTCTCTTCTCCTGACTTTCGTCTTCACGCATGTGAGTTTTTCAAGCTTGTGTCCTCGAGGAAGAGACCTATTGATGCAGCTTCGGAATTCGATTCTGCAATGAGTAACATATTTCAGATCTTGATGAATGTATCTAGAGACTTCTTATGCAAATCTTCTTCTAGCATTGATGAGAGTGAATACGAGTTTGCAGAATATATATGTGAGAGTATGGTGTCTTTGGGTTCTTTGAATTTGCAATGTATCAGTGGCGATAGCACGATACTCTCTTTTTATCTTCAACAGATGCTGGGATATTTCCAACACTTTAAGCTAGCACTTCATTACCAGTCTCTCTTCTTCTGGCTGGCACTGATGAGGGATTTGCTGTCCAAGCAGAAGATTGTTGGAGAAAGTTCAGTTAACAATTCGAGCTCTGGTTCAGGGCAGGCTAATAGTGAAAAGAGAAATATTTTATCTTTTCTGAATGATAATATCTGCAGTTCTATATTGGATATATGTTTCCAGCGCATTCTCAAGAAAGAAAAAGTTCATCCTGGAACAGCATTTTTTTCTGTTGGGGCATTGGAATTGTGGAGCGATGGTTTTGAGGGCAAAGGAGGATTCAGCCAGCATCGTTCAAGGCTGTTGGAGTTGATCCGTTTTTTTGCTTCTTACAAACCTCTTGTAGCTGCTACTAAGGTTTCCGAGAGAATCATTATGATTATCAAGAGCCTCTCACCTCCACCGATGCCCTCTCAGGAACTGGCTGTGTTGGAAAGCATGCAGTCGACTCTAGAAAATGTTGTGAGTGTGGTTTTTGATGGATCAAATGAATATGGCAGCAGTAATTCTGAAATCCAACTTGCGTTGTGCCGAATATTCGAAGGTCTACTTCAACAACTTCTTTCTTTGAAATGGACTGAACCGACACTTGTGGAAATACTCGGGCACTATTTAGATGCATTGGGTCCCTTTTTGAAGTATTACCCAGATGCTGTTGGCAGTGTAATCAATAAACTATTTGAGCTCCTAACTTCACTCCCCTTTGTTGTAAAGGATCCTGCAACAAGTACAGCTCGGCATGCAAGGTTGCAGATTTGTACGTCATTTATTCGATTAGCCAAAGCTGCTGACAAAAGCCTTTTGCCTCACATGAAGGGGATAGCTGACACAATGTCATATTTGCAAAAAGAGGGTGGTTTGCTTCGCGGGGAGCATAATCTCCTCGGCGAAGCATTTCTTGTTATGGCTTCTGCATCTGGGGTTCAACAACAGCAAGAGGTTTTAGCCTGGTTACTTGAACCTTTGAGCAAACAATGGACACAGCCAGATTGGCAAAATACCTATTTATCTGACCCAACAGGTGTGGTTCGCTTGTGCGGTGAGACACAATTTATGTGGTCACTTTTCCACACTGTGACATTCTTTGAGAAGGCACTTAAGCGGAGTGGTATTAGAAAAGGCAGTCAAAGTTTACAAAGCTCATCAACAAGTTCTGCTCCTTTGCATCCAATGGCTTCTCATCTTTCTTGGATGTTGCCTCCTCTCTTAAAATTGCTTCGTGCTGTACATTCCCTTTGGTCACCAACTGTAACTCAAGCATTACCTGGAGAGATAAAAGCTGCAAAGACTATGAGTGATGTTGAGCTAACCAGTCTTCTTGGTGAAGGGAGCTCTAAGGTGACCAAGGGTGGACTTACTTTTGCCGATGGATCTATGCTTGACATGAATAAGGAAGCTTTTGCTGAGCCGAACGAAACTGATATACGAAATTGGTTGAAAGGTATCAGAGATAGTGGGTATAATGTTTTGGGCTTGTCAACGACCATTGGGGATTCATTTTTCAAGTCTTTAGATGTTCAGTCTGTTGAGTTGGCACTGATGGAAAATATACAGTCAATGGAGTTCAGACATATAAAGCAGCTTGTTCACTCAACCTTGGTTCCTCTATTTAAATTCTGTCCGTCGGTTTTGTGGGGTGTGTGGATTGAAAAGCTCTTGCACCCATTACTTGTTTATACTCAGCAGGCACTTAGCTGCTCATGGTCCGGTCTTTTACAAGAAGGTAAAGCAACAGTTCCAGATAATCATGGGATAGCTATTGGGTCAGACTTAAAGGTGGAAGTAATGGAGGAAAAGCTACTTAGGGATTTAACTCGCGAGATATGTTCGCTACTCTCGGTTCTAGCTTCAGCTGGATTGAATTCTGGGCTTCCTTCGCTAGATCAGTCTACTGGCCGTGTGGATGTATCTTCTCTCAAGGACTTGGATTCATTTGCCTCGAGCTCAATGGTTGGGTAA

Network for GWHGAAZE024720

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08389.13	Xpo1	78	236	2.50E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14289	XPO5	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.890
	SRR3591706	second leaf	4.440
	SRR3591707	mature leaf	4.309
	SRR3591708	Shoot apex	7.882
	SRR3591709	Stem	8.896
	SRR3591710	White floral bud	8.342
	SRR3591711	White flower	9.299
	SRR3591712	Green floral bud	10.154
	SRR3591713	Yellow flower	6.661
SRP173429	SRR8316895	Juvenile bud stage	4.735
	SRR8316896	Juvenile bud stage	6.878
	SRR8316897	Juvenile bud stage	3.220
	SRR8316894	Third green stage	2.612
	SRR8316900	Third green stage	7.463
	SRR8316901	Third green stage	5.415
	SRR8316898	Complete white stage	1.653
	SRR8316899	Complete white stage	7.407
	SRR8316903	Complete white stage	3.458
	SRR8316902	Silver flowering stage	1.782
	SRR8316904	Silver flowering stage	3.515
	SRR8316905	Silver flowering stage	1.191
	SRR8316906	Gold flowering stage	3.372
	SRR8316907	Gold flowering stage	3.142
	SRR8316908	Gold flowering stage	3.213
SRP132670	SRR6706286	Control	4.172
	SRR6706287	Light intensity 50%	5.101
	SRR6706288	Light intensity 20%	5.757
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.083
	CNS0095593	Slightly white alabastrum(diploid) 2	4.068
	CNS0095594	Slightly white alabastrum(diploid) 3	4.165
	CNS0095595	Whole white alabastrum(diploid) 2	3.692
	CNS0095596	Whole white alabastrum(diploid) 3	1.939
	CNS0095597	Whole white alabastrum(diploid) 4	3.339
	CNS0095598	Silvery flower (diploied) 1	5.022
	CNS0095599	Silvery flower (diploied) 2	4.739
	CNS0095600	Silvery flower (diploied) 3	7.694
	CNS0095601	Golden flower (diploid) 1	3.527
	CNS0095602	Golden flower (diploid) 2	8.182
	CNS0095603	Golden flower (diploid) 3	7.317
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.106
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.921
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.636
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.153
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.414
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.984
	CNS0095610	Silvery flower (tetraploid) 1	7.223
	CNS0095611	Silvery flower (tetraploid) 2	8.243
	CNS0095612	Silvery flower (tetraploid) 3	5.442
	CNS0095613	Golden flower (tetraploid) 1	1.998
	CNS0095614	Golden flower (tetraploid) 2	3.772
	CNS0095615	Golden flower (tetraploid) 3	3.292
CRA001975	CRR073297	Stem 1	6.375
	CRR073298	Stem 2	6.771
	CRR073299	Stem 3	5.101
	CRR073300	Leaf 1	7.131
	CRR073301	Leaf 2	5.416
	CRR073302	Leaf 3	4.565
	CRR073303	Juvenile bud 1	5.545
	CRR073304	Juvenile bud 2	2.393
	CRR073305	Juvenile bud 3	5.226
	CRR073306	Third green 1	0.451
	CRR073307	Third green 2	0.660
	CRR073308	Third green 3	1.205
	CRR073309	Second white 1	0.757
	CRR073310	Second white 2	0.860
	CRR073311	Second white 3	1.507
	CRR073312	Silver flowering 1	0.612
	CRR073313	Silver flowering 2	0.856
	CRR073314	Silver flowering 3	0.501
	CRR073315	Gold flowering 1	1.614
	CRR073316	Gold flowering 2	4.519
	CRR073317	Gold flowering 3	3.076
	CRR073318	Tawny withering 1	4.088
	CRR073319	Tawny withering 2	2.624
	CRR073320	Tawny withering 3	3.580