Gene detail

Detail information of GWHGAAZE024767

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010245787.1	0	PREDICTED: ribosomal lysine N-methyltransferase 3 [Nelumbo nucifera]
Swissprot	tr\|Q9XI84\|RBCMT_ARATH	0.000003	[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic (Precursor)
trEMBL	tr\|V4SLC3\|V4SLC3_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR39630.1}
TAIR10	AT3G56570.1	4E-120	SET domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	49001992	49016848	+
GWHAAZE00000007	mRNA	49001992	49016848	+
GWHAAZE00000007	exon	49001992	49002375	+
GWHAAZE00000007	exon	49005388	49005584	+
GWHAAZE00000007	exon	49015306	49015561	+
GWHAAZE00000007	exon	49016180	49016848	+
GWHAAZE00000007	CDS	49001992	49002375	+
GWHAAZE00000007	CDS	49005388	49005584	+
GWHAAZE00000007	CDS	49015306	49015561	+
GWHAAZE00000007	CDS	49016180	49016848	+

Transcript Sequence
>GWHTAAZE024801 ATGAGAGCATTCAAGCGGTGGATGAAATGGAAAGGCATAGAGTGGAGCGACGCACTCGATCTCATTGACAATCAAAGCAACCACCAAGGAGAAGGTGGTATGTTTGTGAAAGCATTGTGCGATCTGCACGAAGGTGATTTAGTGGCCACAATACCTAAGCAGAGTTGCCTCACCATCAAGACCTCTGGTGCATGTGACCTCATCGAGTTGGCTGGTCTAGAGGGCTCCCTTGCTCTTTCCTTCGCAATCATGTATGAGAAGAGTTTGGGCCAACAATCTCCTTGGTTTGATTATCTTCAGCTTTTGCCCCAATCCGAGTCCATACCCTTGGTCTGGTCTTTTGAGCAAATCGACTCACTTCTTGCTGGTACTGAACTTCACAAGATGGTTAAAGAAGACAAGGCTCATGTGTACAAGGACTGGAAAGCATGTATTTTGCCTATTCTGGATTCAGCTCCTGTGGAGCTTAATCCAATATTCTTTGGCGCCGAACAGTACTTTGCTGCAAAAAGTCTTGTTGCATCTCGCTCCTTTGCAATAGATGACTACCACGGATTTGGGATGGTTCCGTTGGCGGACCTGTTTAATCACAAAACAGGTGCTGAAGATGTGCACTTCACAGCTGTATCATCTCCTTCTGAATCTGACAGTGATAATGATGGCAGCGATCCAAATGAGAACGACGATGCCAATGATGATTCTGAACCCTTGATTCAAAATTTTCAGTCAAGAAATAGCCCTTCTAGTCCTAGTAAGTTGGACAGTTCTTCAGACATGGGCGATAACTCTACGGTCAGGGAAATGATTATGGTGAGAGATGTCAAAGCTGGAGCCGAGGTCTACAACACATACGGATTGATGGGCAATGCTGGGTTGCTACACAGATACGGATTCACAGAGTGGGATAATCCATACGACATTGTGAATATAGACCTTGAATTGGTACTTCAATGGAGTTCATCTTTATTTTCATCTCGTTACAGTAGAGCAAGGCTGTCCCTTTGGAGGAGACTAGATTATTCTGGGACCATTGGTGAAAACTCCGAGTACTTTGAAATCTCATTCAATGGGGAACCCGAAGTCGAGTTGCTGATTTTGCTTTATATAATGCTATTACCAGAGGAAACATATAGTGAATTGGACCTCAGAGTTTCAACCGAAGGGTGGGCATTAGAAGAATGTATTGTTTTGTCAAAGAAAGAGAATATCGCGTTGGAAAGAGGGTCAGAAGCGTGCAAGAGTATGTTGCTGACAAAAGGGGTTCGAGGTGCACTTTTGAGGATTGCAGATATCCGAGAAAGCTTTTATCGTGAAGCGAGCAGAGACGACGAGATCGAAGCGCTGAAGGTGGAGAGAGAGAGGGGAGGAGAAAGAGAGTTGTACCATTCGCGGGGTTTGCGGGTGAGTGAGAGGAGGATACTTGAGAAACTTAGAAATTATGTCTCCTCCTTTGGTGACGTTCCAAATGGAAGTCGCAGTGTAAGGAAGAAACTAAAGAGGAAATGA

Network for GWHGAAZE024767

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	33	285	7.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0018026	biological_process	peptidyl-lysine monomethylation
GO:0016279	molecular_function	protein-lysine N-methyltransferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.847
	SRR3591706	second leaf	2.108
	SRR3591707	mature leaf	3.185
	SRR3591708	Shoot apex	2.476
	SRR3591709	Stem	3.170
	SRR3591710	White floral bud	3.415
	SRR3591711	White flower	4.788
	SRR3591712	Green floral bud	6.344
	SRR3591713	Yellow flower	4.332
SRP173429	SRR8316895	Juvenile bud stage	4.021
	SRR8316896	Juvenile bud stage	5.874
	SRR8316897	Juvenile bud stage	2.166
	SRR8316894	Third green stage	2.511
	SRR8316900	Third green stage	5.647
	SRR8316901	Third green stage	5.707
	SRR8316898	Complete white stage	1.533
	SRR8316899	Complete white stage	4.335
	SRR8316903	Complete white stage	2.923
	SRR8316902	Silver flowering stage	2.366
	SRR8316904	Silver flowering stage	1.933
	SRR8316905	Silver flowering stage	1.684
	SRR8316906	Gold flowering stage	5.402
	SRR8316907	Gold flowering stage	4.640
	SRR8316908	Gold flowering stage	3.052
SRP132670	SRR6706286	Control	3.916
	SRR6706287	Light intensity 50%	3.968
	SRR6706288	Light intensity 20%	4.277
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.609
	CNS0095593	Slightly white alabastrum(diploid) 2	5.669
	CNS0095594	Slightly white alabastrum(diploid) 3	5.063
	CNS0095595	Whole white alabastrum(diploid) 2	3.629
	CNS0095596	Whole white alabastrum(diploid) 3	4.221
	CNS0095597	Whole white alabastrum(diploid) 4	3.025
	CNS0095598	Silvery flower (diploied) 1	3.056
	CNS0095599	Silvery flower (diploied) 2	1.452
	CNS0095600	Silvery flower (diploied) 3	2.752
	CNS0095601	Golden flower (diploid) 1	1.655
	CNS0095602	Golden flower (diploid) 2	3.731
	CNS0095603	Golden flower (diploid) 3	3.488
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.289
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.239
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.860
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.181
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.393
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.441
	CNS0095610	Silvery flower (tetraploid) 1	2.372
	CNS0095611	Silvery flower (tetraploid) 2	1.751
	CNS0095612	Silvery flower (tetraploid) 3	2.354
	CNS0095613	Golden flower (tetraploid) 1	0.752
	CNS0095614	Golden flower (tetraploid) 2	1.810
	CNS0095615	Golden flower (tetraploid) 3	1.596
CRA001975	CRR073297	Stem 1	3.984
	CRR073298	Stem 2	4.526
	CRR073299	Stem 3	3.733
	CRR073300	Leaf 1	5.708
	CRR073301	Leaf 2	5.710
	CRR073302	Leaf 3	4.231
	CRR073303	Juvenile bud 1	2.031
	CRR073304	Juvenile bud 2	1.297
	CRR073305	Juvenile bud 3	3.201
	CRR073306	Third green 1	1.161
	CRR073307	Third green 2	1.299
	CRR073308	Third green 3	0.879
	CRR073309	Second white 1	1.638
	CRR073310	Second white 2	2.067
	CRR073311	Second white 3	1.166
	CRR073312	Silver flowering 1	2.102
	CRR073313	Silver flowering 2	0.746
	CRR073314	Silver flowering 3	0.752
	CRR073315	Gold flowering 1	0.918
	CRR073316	Gold flowering 2	2.070
	CRR073317	Gold flowering 3	2.402
	CRR073318	Tawny withering 1	4.422
	CRR073319	Tawny withering 2	4.287
	CRR073320	Tawny withering 3	3.848