Detail information of GWHGAAZE024776


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHN38008.10hypothetical protein glysoja_007050 [Glycine soja]
Swissprottr|F4I171|MD15A_ARATH5E-165Mediator of RNA polymerase II transcription subunit 15a
trEMBLtr|A0A067EEL3|A0A067EEL3_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO52330.1}
TAIR10AT1G15780.15E-142Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene4918849849198985-
GWHAAZE00000007mRNA4918849849198985-
GWHAAZE00000007exon4919889649198985-
GWHAAZE00000007exon4919760449197678-
GWHAAZE00000007exon4919704749197455-
GWHAAZE00000007exon4919564249196174-
GWHAAZE00000007exon4919322949193573-
GWHAAZE00000007exon4919093949191097-
GWHAAZE00000007exon4919024449190332-
GWHAAZE00000007exon4918849849188699-
GWHAAZE00000007CDS4919889649198985-
GWHAAZE00000007CDS4919760449197678-
GWHAAZE00000007CDS4919704749197455-
GWHAAZE00000007CDS4919564249196174-
GWHAAZE00000007CDS4919322949193573-
GWHAAZE00000007CDS4919093949191097-
GWHAAZE00000007CDS4919024449190332-
GWHAAZE00000007CDS4918849849188699-
Transcript Sequence

Network for GWHGAAZE024776

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0259


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf44.068
SRR3591706second leaf21.762
SRR3591707mature leaf31.406
SRR3591708Shoot apex30.547
SRR3591709Stem60.505
SRR3591710White floral bud55.259
SRR3591711White flower71.392
SRR3591712Green floral bud45.141
SRR3591713Yellow flower60.411
SRP173429 SRR8316895Juvenile bud stage 16.346
SRR8316896Juvenile bud stage 23.944
SRR8316897Juvenile bud stage 10.215
SRR8316894Third green stage 11.012
SRR8316900Third green stage 24.406
SRR8316901Third green stage 26.707
SRR8316898Complete white stage 7.688
SRR8316899Complete white stage 27.954
SRR8316903Complete white stage 27.453
SRR8316902Silver flowering stage18.473
SRR8316904Silver flowering stage28.210
SRR8316905Silver flowering stage12.206
SRR8316906Gold flowering stage 38.397
SRR8316907Gold flowering stage 38.101
SRR8316908Gold flowering stage 37.504
SRP132670SRR6706286Control27.976
SRR6706287Light intensity 50%29.217
SRR6706288Light intensity 20%30.585
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.860
CNS0095593Slightly white alabastrum(diploid) 220.055
CNS0095594Slightly white alabastrum(diploid) 319.289
CNS0095595Whole white alabastrum(diploid) 218.504
CNS0095596Whole white alabastrum(diploid) 313.762
CNS0095597Whole white alabastrum(diploid) 415.502
CNS0095598Silvery flower (diploied) 126.403
CNS0095599Silvery flower (diploied) 226.899
CNS0095600Silvery flower (diploied) 353.107
CNS0095601Golden flower (diploid) 126.939
CNS0095602Golden flower (diploid) 249.863
CNS0095603Golden flower (diploid) 347.935
CNS0095604Slightly white alabastrum(tetraploid) 121.082
CNS0095605Slightly white alabastrum(tetraploid) 218.129
CNS0095606Slightly white alabastrum(tetraploid) 335.506
CNS0095607Whole white alabastrum(tetraploid) 115.136
CNS0095608Whole white alabastrum(tetraploid) 213.846
CNS0095609Whole white alabastrum(tetraploid) 322.765
CNS0095610Silvery flower (tetraploid) 149.524
CNS0095611Silvery flower (tetraploid) 251.575
CNS0095612Silvery flower (tetraploid) 350.546
CNS0095613Golden flower (tetraploid) 132.593
CNS0095614Golden flower (tetraploid) 240.958
CNS0095615Golden flower (tetraploid) 358.632
CRA001975CRR073297Stem 141.527
CRR073298Stem 241.857
CRR073299Stem 331.774
CRR073300Leaf 142.931
CRR073301Leaf 240.300
CRR073302Leaf 326.791
CRR073303Juvenile bud 143.003
CRR073304Juvenile bud 226.647
CRR073305Juvenile bud 362.853
CRR073306Third green 139.947
CRR073307Third green 227.596
CRR073308Third green 335.371
CRR073309Second white 139.540
CRR073310Second white 250.984
CRR073311Second white 351.612
CRR073312Silver flowering 156.848
CRR073313Silver flowering 271.330
CRR073314Silver flowering 353.530
CRR073315Gold flowering 122.407
CRR073316Gold flowering 237.121
CRR073317Gold flowering 321.268
CRR073318Tawny withering 144.382
CRR073319Tawny withering 244.475
CRR073320Tawny withering 343.445