Gene detail

Detail information of GWHGAAZE024805

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009771499.1	0	PREDICTED: cytochrome P450 78A6-like [Nicotiana sylvestris]
COG	YP_004303682.1	1E-27	cytochrome P450
Swissprot	tr\|O48927\|C78A3_SOYBN	0	Cytochrome P450 78A3
trEMBL	tr\|K4B016\|K4B016_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g096280.1.1}
TAIR10	AT2G46660.1	3E-180	cytochrome P450, family 78, subfamily A, polypeptide 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	49765031	49767608	-
GWHAAZE00000007	mRNA	49765031	49767608	-
GWHAAZE00000007	exon	49765031	49765654	-
GWHAAZE00000007	exon	49766652	49767608	-
GWHAAZE00000007	CDS	49766652	49767608	-
GWHAAZE00000007	CDS	49765031	49765654	-

Transcript Sequence
>GWHTAAZE024839 ATGACAACACATATAGAAAGCCTGTGGGTGTTTGCCTTGGCATCAAAATGCAAATCCTACTCTTCCATTTGCCCTTTCTTCGCCTTCTTCGGCTTGGCTTGGCTCCTCATAAGCTTGATTTACTGGGTTCACCCTGGTGGTCCAGCTTGGGGTAAACTCAGCTCGAAGAAGAACAAACTCTCAAAGCCAATACCTGGCCCAAGAGGTCTTCCTATCATAGGAAGCCTCAATCTCATGTCCGGACTAGCCCACCACAAGATCTCGGCCGCAGCTCAAGCCAATCGAGCTACTCGGCTCATGGCTTTCAGCCTAGGCGAAACCCGAGCCGTAGTTACATGTAATCCTGATGTAGCCAAAGAGATCTTGAATAGTTCTGTATTCGCCGACCGTCCGGTTAAAGAGTCTGCTTATAGGCTGATGTTCAACAGGGCTATGGGTTTCGCTCCTTACGGGGTTTACTGGCGAACGCTTAGAAGAATTTCGGCCGCTCATCTCTTCTGCCCGAAACAAATCAAGGCATCGGAGGGACATCGGTTGGAGATATCTCGTCAGCTGATGGAAATATTTCGCGCCAAAAAAGGGAATATACGTGTACGGGATGCACTGAAGCGGGCTTCCCTAAACAGCGTGATGTGCTCCGTATTCGGACGAAAATACGGGCTAAATTCGGACAAGGGGGAGATCGAAGAGGTTAGAGAATTAGTTGAAGAAGGGTATGAGCTTTTGGGGGCAGTTAACTGGTCCGACCACCTTCCTTGGTTACTTGATTTTGACCTTCAAAAAATACGGTTCAGGTGCTCAAACCTTGTACCTAAAGTAAACCGGTTCGTGGGCCGGATTATTAAGGAGCATAAGGAACAGACCGGAGAGTTGAACCGGGACTTCGTTGGCGTCTTGCTGTCTCTTCAAGGGCCTGATAATAAATTAGCCGAGTCAGACATGATCGCCGTACTTTGGGAAATGATATTCAGAGGGACTGATACCGTGGCAGTTTTGATCGAGTGGGTGCTAGCGAGGATGGTGCTTCATCTTGATGTTCAATCAATGGTCCAGGATGAACTAGACAGGGTTGTGGGGAGGGCTGGTGTCGTGAACGAATCTGATCTCACTGATATGGTGTATCTAACCGCTGTGGTGAAAGAAGTGCTTAGATTACATCCACCTGGCCCACTTCTGTCGTGGGCCCGGTTGGCGATTACAGACACCAAGGTGGACGGATACGATGTGCCGGCGGGGACCACCGCTATGGTCAACATGTGGGCCATCACACGGGACCCTCATGTGTGGGCGGACCCACTTGAATTTAGGCCGCAAAGGTTCGTTAACGAGGCCGGACTAGCTGATTTCTCAGTTTTGGGATCGGACTTGAGGCTTGCACCCTTTGGGTCCGGAAGGCGGACCTGCCCTGGGAAGACCCTGGGCTTGACCACGGTTACCTTTTGGGTGGCCTCGCTTTTGCACGAGTTCGAATTCAGGGCGTGTGACCCGAACCCGGTGGACCTCTCAGAGGTGTTGCGACTCTCTTGTGAGATGGCTAACCCACTTGCAGTCAATGTTCAGCCCAGGACATCAGAAGCTTGA

Network for GWHGAAZE024805

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	65	498	6.80E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.120
	SRR3591706	second leaf	31.906
	SRR3591707	mature leaf	55.859
	SRR3591708	Shoot apex	70.399
	SRR3591709	Stem	17.589
	SRR3591710	White floral bud	25.383
	SRR3591711	White flower	73.148
	SRR3591712	Green floral bud	6.976
	SRR3591713	Yellow flower	21.785
SRP173429	SRR8316895	Juvenile bud stage	1.177
	SRR8316896	Juvenile bud stage	0.867
	SRR8316897	Juvenile bud stage	2.037
	SRR8316894	Third green stage	0.977
	SRR8316900	Third green stage	2.872
	SRR8316901	Third green stage	3.606
	SRR8316898	Complete white stage	3.447
	SRR8316899	Complete white stage	6.568
	SRR8316903	Complete white stage	6.025
	SRR8316902	Silver flowering stage	11.837
	SRR8316904	Silver flowering stage	11.482
	SRR8316905	Silver flowering stage	6.149
	SRR8316906	Gold flowering stage	13.872
	SRR8316907	Gold flowering stage	12.921
	SRR8316908	Gold flowering stage	26.133
SRP132670	SRR6706286	Control	5.366
	SRR6706287	Light intensity 50%	4.681
	SRR6706288	Light intensity 20%	4.565
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.118
	CNS0095593	Slightly white alabastrum(diploid) 2	4.221
	CNS0095594	Slightly white alabastrum(diploid) 3	5.041
	CNS0095595	Whole white alabastrum(diploid) 2	2.406
	CNS0095596	Whole white alabastrum(diploid) 3	1.133
	CNS0095597	Whole white alabastrum(diploid) 4	2.814
	CNS0095598	Silvery flower (diploied) 1	30.689
	CNS0095599	Silvery flower (diploied) 2	22.164
	CNS0095600	Silvery flower (diploied) 3	40.269
	CNS0095601	Golden flower (diploid) 1	29.050
	CNS0095602	Golden flower (diploid) 2	53.051
	CNS0095603	Golden flower (diploid) 3	53.256
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.856
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.960
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.083
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.586
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.949
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.143
	CNS0095610	Silvery flower (tetraploid) 1	36.650
	CNS0095611	Silvery flower (tetraploid) 2	22.709
	CNS0095612	Silvery flower (tetraploid) 3	13.258
	CNS0095613	Golden flower (tetraploid) 1	6.131
	CNS0095614	Golden flower (tetraploid) 2	14.698
	CNS0095615	Golden flower (tetraploid) 3	6.711
CRA001975	CRR073297	Stem 1	6.819
	CRR073298	Stem 2	5.987
	CRR073299	Stem 3	8.775
	CRR073300	Leaf 1	9.312
	CRR073301	Leaf 2	11.279
	CRR073302	Leaf 3	9.268
	CRR073303	Juvenile bud 1	14.999
	CRR073304	Juvenile bud 2	10.464
	CRR073305	Juvenile bud 3	16.231
	CRR073306	Third green 1	59.953
	CRR073307	Third green 2	138.998
	CRR073308	Third green 3	82.609
	CRR073309	Second white 1	7.241
	CRR073310	Second white 2	7.936
	CRR073311	Second white 3	1.971
	CRR073312	Silver flowering 1	0.823
	CRR073313	Silver flowering 2	4.245
	CRR073314	Silver flowering 3	5.098
	CRR073315	Gold flowering 1	42.665
	CRR073316	Gold flowering 2	16.846
	CRR073317	Gold flowering 3	61.804
	CRR073318	Tawny withering 1	5.477
	CRR073319	Tawny withering 2	8.119
	CRR073320	Tawny withering 3	5.319