Gene detail

Detail information of GWHGAAZE024823

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI40526.3	0	unnamed protein product [Vitis vinifera]
COG	YP_003280830.1	9E-27	nuclear protein SET
Swissprot	tr\|Q9SUE7\|ATX4_ARATH	0	Histone-lysine N-methyltransferase ATX4
trEMBL	tr\|F6I6C8\|F6I6C8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62524.1}
TAIR10	AT3G61740.2	0	SET domain protein 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50101411	50115603	+
GWHAAZE00000007	mRNA	50101411	50115603	+
GWHAAZE00000007	exon	50101411	50101656	+
GWHAAZE00000007	exon	50101750	50102256	+
GWHAAZE00000007	exon	50102544	50102599	+
GWHAAZE00000007	exon	50102695	50102861	+
GWHAAZE00000007	exon	50103008	50103144	+
GWHAAZE00000007	exon	50103532	50103651	+
GWHAAZE00000007	exon	50103918	50103986	+
GWHAAZE00000007	exon	50104077	50104168	+
GWHAAZE00000007	exon	50104283	50104375	+
GWHAAZE00000007	exon	50109727	50109862	+
GWHAAZE00000007	exon	50110715	50110787	+
GWHAAZE00000007	exon	50110918	50111017	+
GWHAAZE00000007	exon	50111137	50111213	+
GWHAAZE00000007	exon	50111357	50111502	+
GWHAAZE00000007	exon	50111790	50111894	+
GWHAAZE00000007	exon	50113250	50113314	+
GWHAAZE00000007	exon	50113418	50113643	+
GWHAAZE00000007	exon	50113761	50113847	+
GWHAAZE00000007	exon	50113971	50114027	+
GWHAAZE00000007	exon	50114111	50114200	+
GWHAAZE00000007	exon	50114790	50114876	+
GWHAAZE00000007	exon	50115071	50115145	+
GWHAAZE00000007	exon	50115273	50115367	+
GWHAAZE00000007	exon	50115513	50115603	+
GWHAAZE00000007	CDS	50101411	50101656	+
GWHAAZE00000007	CDS	50101750	50102256	+
GWHAAZE00000007	CDS	50102544	50102599	+
GWHAAZE00000007	CDS	50102695	50102861	+
GWHAAZE00000007	CDS	50103008	50103144	+
GWHAAZE00000007	CDS	50103532	50103651	+
GWHAAZE00000007	CDS	50103918	50103986	+
GWHAAZE00000007	CDS	50104077	50104168	+
GWHAAZE00000007	CDS	50104283	50104375	+
GWHAAZE00000007	CDS	50109727	50109862	+
GWHAAZE00000007	CDS	50110715	50110787	+
GWHAAZE00000007	CDS	50110918	50111017	+
GWHAAZE00000007	CDS	50111137	50111213	+
GWHAAZE00000007	CDS	50111357	50111502	+
GWHAAZE00000007	CDS	50111790	50111894	+
GWHAAZE00000007	CDS	50113250	50113314	+
GWHAAZE00000007	CDS	50113418	50113643	+
GWHAAZE00000007	CDS	50113761	50113847	+
GWHAAZE00000007	CDS	50113971	50114027	+
GWHAAZE00000007	CDS	50114111	50114200	+
GWHAAZE00000007	CDS	50114790	50114876	+
GWHAAZE00000007	CDS	50115071	50115145	+
GWHAAZE00000007	CDS	50115273	50115367	+
GWHAAZE00000007	CDS	50115513	50115603	+

Transcript Sequence
>GWHTAAZE024857 ATGCCGAAGGTGGAAGAGACGGATTGCGAAGATAAAGACGATTCTTCTCTGAATCAAAATAAACTGAAGAAAGAAGTGTATTACCCAGTTCCTCTAAGGGGATTTGATCAGATTGAGAGTTTTGAGAGTTATAGTTCCCTTCTTAATCCTTGGCGCAATGGAGTATCAACCAGCAATGATGAAATTGAGGCAAATTCCAAGTGTAATCGTCCTCCATTGTTAAAATCATCAAGAGGACGTGTTCAGTTAAGTTTTGGTCATGGTGAAGCTAAGAAGAGAATGAGGTTTGAAGGTTCTAATTTTGGTGGCCAATTGTTCAAGAAACAGCGAATGGAAGAAGATAAGTTCAGTCCATATTCTGTGGAAATAGAGGTAAGAGATATAGGTTCTATAGGGTACAAAGGATATGACAGTAATAATAAAATGGTTTCTAGTTTGAGAAGTTCTTTAACATCTGCCAGTGGTGGAAAATCTCGGTCGTTGTTAGAGACTGAGGAGTATTCGCCAAGGTTGGTTGGTAAATACAACGGAAGAGAGAAACTGGGGAAGGTGAAGTTTGAGAAGAAGGGGTTTTATAGGGCAGAGGACTTTGTTTTGAATGATATAGTTTGGGCAAAATGTGGGAAGAAATTCCCATCTTGGCCAGCTGTTGTGATAGACCCGCTATGGCAGGCCCCAGAGTCTGTTCTGAGAGCAAGTGTTCCTGGTACTACATGTGTGATGTTTTATGGGTATTCCAAAGATGGAAAAAGGGACTACGCATGGGTGAAGGACGGAATGATCTTTCCATTTATAGAGTACATGGAAAGATTCAAGGGGCAGACTCAGTTGTATGGCAACAAGCCAAGGGATTTTCGTATGGCTATCAAGGAGGCATTTTCGAAAGAACATGGCTACACTGATAGTGGCCTTGGGGAAACTAATGCACTAACAAATCGTAGTGAAATTTTGGAATTCTGCTCTCTTAACCAGGCAATATTGCAACAAGGTGAAATTGATGTTAACCCCATGTTGCTAAGGAGGCCTTATATTGCTGATAGACAGTTGACTGTTAGCGGTCTTTTCTTTGACAAGCTTGTAACCCCATTTTGTGCAGGAGGCCTTAGACTGCTGGATGCATATGGTAGTAAAGACACAAAACCCTGTGACAGTTGTGGTATGATTCTACCATGCAAGAAGAAAGTAAAGGGAACAACTTCAAACTCCGAGTTCTTCTGTGAGCATTGTGCTAAGGTATGCTGTGATGGTTGTGATGTTTGGGTACATGCTGAGTGTGCCAAAATTTCCAGCAAGATTCTCAAGAATCTGGAGGACAATGATTATTACTGCCCCCAATGCAAAGTAAAGTCTAATTATGAATTGTCTTCTGTTGAGAAGGGGCAGTCAAAAGTCAGGTCTACAGAACAGAGTGGGCAAACGGTGATGCCTGATAAGATAGCTGTTGTTTGCACAGGCATGGAAGGAATTTATTATCCAAGTCTTCATCTGGTTGAGTGCAAGTGTGGTTCATGCGGGACAAAGAAACAGACTCCTAGTGAATGGGAACGACATACTGGTTCCAGGGCAAAAAAATGGAAAGTCAGCATCAAAGTGAAGGGTTCAGCGCTGCCGCTGGAAAAATGGCTTGCAGAGTATAACGCATTCGGTTTTAATCCTCTGAAGTTAGATAAGCAGCAGTTATTTTCCTTTTTGCAAGAGAAGTATGAACCTGTTTATGCAAAGTGGACAACAGAACGCTGTGCTGTTTGTAGATGGGTTGAAGATTGGGACTATAACAAAATTATTATCTGCAACAGGTGTCAAATAGCTGTACATCAAGAATGTTATGGAGTGAGAAATATTCAGGATTTTGCTTCATGGGTTTGTAGAGCATGTGGTGCTTTGAAGCCAACTGATGTTGACTCCTTATGGGTTCATGTCACTTGTGCATGGTTTCAGCCCGAGGTTGCTTTCTTAGATGATGAGCAAATGGAGCCTGCTGTTGGAATTCTTAGAATTCCATCAATTTCCTTTGTCAAGGCATGTGTAATTTGTAAGCAGACCCACGGTTCTTGCACACAGTGTTGCAAATGCGCCACTTATTTTCATGCAATGTGTGCTTCACGGGCGGGATATCGAATGGAATTGCACTGCTCGGAGAAGTATGGGATACAAATAACCAAGTGGACATCATATTGTGCTGTTCATAGGGCCCCGAATGCAGATAATGTCTTAGTGATACAGACTCCACTAGGGGTTTTTGCTACCCGAAGCTTGCTTCAAAATTCTAATCAAGAACAGCAGCGGTTCAGGGGTTCGAGGCTCATCTCGTGTAATAAGATAACCAAAGAATCTGATTCATCAAACACAGAGACAAATGAGATTGAGCCCCTCTCTGCAGCAAGGTGCCGCATCTTCAGAAAGTCAAACTATAAGGGGGTTGGTAAAGAGCCAATATTCCACCGACTGATGGGACCAAGGCATCATTCCTTAGATGCCATAGATTGCTTAAGCTCACATGGAGGCGTTGAAGAGTTGAATAATTGTTCGACATTTAAGGAACGACTTAATCATTTACAGAGAGTTGAAAATCTTCGGGTTTGTTTTGGTAAATCTGGAATACATGGATGGGGCCTTTTTGCAAGGCGGGATATTCACGAAGGGGAAATGGTTCTTGAATATCGTGGTGAGCAGGTGAGGCGCAGTGTAGCAGATACAAGGGAGGCCCACTACAGGAAAGAACGTAAAGATTGCTATCTTTTTAAGATAAGTGAAGAAATAGTAATCGATGCCACATATAAGGGGAATATTGCGCGCTTAATCAACCATTCGTGCATGCCCAACTGCTATGCAAGGATCATGAGCATGGGTGAAGAAGATAGCCGCATTGTTCTTATAGCCAAGTCCAATGTGTCTGCTGGTGATGAGTATGATTACTTGTTTGATCCGGATGAGCGTGATGAACTTAAAGTCCCTTGTTTATGCGGAGCTTCTAATTGTCGGAAATTCATGAATTAG

Network for GWHGAAZE024823

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0009

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00855.18	PWWP	198	294	2.00E-12
PF01342.22	SAND	477	536	2.00E-05
PF13832.7	zf-HC5HC2H_2	621	729	1.60E-22
PF00856.29	SET	869	969	6.80E-14

Protein Sequence

>GWHPAAZE024841
MPKVEETDCEDKDDSSLNQNKLKKEVYYPVPLRGFDQIESFESYSSLLNPWRNGVSTSNDEIEANSKCNRPPLLKSSRGRVQLSFGHGEAKKRMRFEGSNFGGQLFKKQRMEEDKFSPYSVEIEVRDIGSIGYKGYDSNNKMVSSLRSSLTSASGGKSRSLLETEEYSPRLVGKYNGREKLGKVKFEKKGFYRAEDFVLNDIVWAKCGKKFPSWPAVVIDPLWQAPESVLRASVPGTTCVMFYGYSKDGKRDYAWVKDGMIFPFIEYMERFKGQTQLYGNKPRDFRMAIKEAFSKEHGYTDSGLGETNALTNRSEILEFCSLNQAILQQGEIDVNPMLLRRPYIADRQLTVSGLFFDKLVTPFCAGGLRLLDAYGSKDTKPCDSCGMILPCKKKVKGTTSNSEFFCEHCAKVCCDGCDVWVHAECAKISSKILKNLEDNDYYCPQCKVKSNYELSSVEKGQSKVRSTEQSGQTVMPDKIAVVCTGMEGIYYPSLHLVECKCGSCGTKKQTPSEWERHTGSRAKKWKVSIKVKGSALPLEKWLAEYNAFGFNPLKLDKQQLFSFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGVRNIQDFASWVCRACGALKPTDVDSLWVHVTCAWFQPEVAFLDDEQMEPAVGILRIPSISFVKACVICKQTHGSCTQCCKCATYFHAMCASRAGYRMELHCSEKYGIQITKWTSYCAVHRAPNADNVLVIQTPLGVFATRSLLQNSNQEQQRFRGSRLISCNKITKESDSSNTETNEIEPLSAARCRIFRKSNYKGVGKEPIFHRLMGPRHHSLDAIDCLSSHGGVEELNNCSTFKERLNHLQRVENLRVCFGKSGIHGWGLFARRDIHEGEMVLEYRGEQVRRSVADTREAHYRKERKDCYLFKISEEIVIDATYKGNIARLINHSCMPNCYARIMSMGEEDSRIVLIAKSNVSAGDEYDYLFDPDERDELKVPCLCGASNCRKFMN

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.346
	SRR3591706	second leaf	15.793
	SRR3591707	mature leaf	16.667
	SRR3591708	Shoot apex	17.455
	SRR3591709	Stem	22.997
	SRR3591710	White floral bud	13.754
	SRR3591711	White flower	25.847
	SRR3591712	Green floral bud	10.970
	SRR3591713	Yellow flower	22.778
SRP173429	SRR8316895	Juvenile bud stage	6.682
	SRR8316896	Juvenile bud stage	9.056
	SRR8316897	Juvenile bud stage	6.615
	SRR8316894	Third green stage	3.900
	SRR8316900	Third green stage	7.890
	SRR8316901	Third green stage	6.701
	SRR8316898	Complete white stage	2.097
	SRR8316899	Complete white stage	8.171
	SRR8316903	Complete white stage	4.671
	SRR8316902	Silver flowering stage	4.270
	SRR8316904	Silver flowering stage	6.074
	SRR8316905	Silver flowering stage	2.370
	SRR8316906	Gold flowering stage	9.103
	SRR8316907	Gold flowering stage	9.215
	SRR8316908	Gold flowering stage	11.772
SRP132670	SRR6706286	Control	6.502
	SRR6706287	Light intensity 50%	6.801
	SRR6706288	Light intensity 20%	7.379
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.519
	CNS0095593	Slightly white alabastrum(diploid) 2	5.682
	CNS0095594	Slightly white alabastrum(diploid) 3	6.838
	CNS0095595	Whole white alabastrum(diploid) 2	5.657
	CNS0095596	Whole white alabastrum(diploid) 3	5.754
	CNS0095597	Whole white alabastrum(diploid) 4	4.679
	CNS0095598	Silvery flower (diploied) 1	9.392
	CNS0095599	Silvery flower (diploied) 2	7.039
	CNS0095600	Silvery flower (diploied) 3	8.717
	CNS0095601	Golden flower (diploid) 1	6.360
	CNS0095602	Golden flower (diploid) 2	9.182
	CNS0095603	Golden flower (diploid) 3	9.060
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.982
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.332
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.440
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.381
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.784
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.838
	CNS0095610	Silvery flower (tetraploid) 1	16.869
	CNS0095611	Silvery flower (tetraploid) 2	10.635
	CNS0095612	Silvery flower (tetraploid) 3	15.660
	CNS0095613	Golden flower (tetraploid) 1	13.119
	CNS0095614	Golden flower (tetraploid) 2	14.131
	CNS0095615	Golden flower (tetraploid) 3	12.265
CRA001975	CRR073297	Stem 1	7.325
	CRR073298	Stem 2	5.851
	CRR073299	Stem 3	4.452
	CRR073300	Leaf 1	6.359
	CRR073301	Leaf 2	4.548
	CRR073302	Leaf 3	2.552
	CRR073303	Juvenile bud 1	3.241
	CRR073304	Juvenile bud 2	1.988
	CRR073305	Juvenile bud 3	3.373
	CRR073306	Third green 1	1.269
	CRR073307	Third green 2	1.178
	CRR073308	Third green 3	1.437
	CRR073309	Second white 1	1.308
	CRR073310	Second white 2	3.804
	CRR073311	Second white 3	3.994
	CRR073312	Silver flowering 1	2.238
	CRR073313	Silver flowering 2	2.201
	CRR073314	Silver flowering 3	4.038
	CRR073315	Gold flowering 1	2.626
	CRR073316	Gold flowering 2	3.848
	CRR073317	Gold flowering 3	1.497
	CRR073318	Tawny withering 1	3.371
	CRR073319	Tawny withering 2	4.436
	CRR073320	Tawny withering 3	4.129