Gene detail

Detail information of GWHGAAZE024826

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010261575.1	0	PREDICTED: beclin-1-like protein [Nelumbo nucifera]
Swissprot	tr\|Q9M367\|BECN1_ARATH	0	Beclin-1-like protein
trEMBL	tr\|D7UCP6\|D7UCP6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40511.3}
TAIR10	AT3G61710.1	1E-174	AUTOPHAGY 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50140243	50155918	+
GWHAAZE00000007	mRNA	50140243	50155918	+
GWHAAZE00000007	exon	50140243	50140438	+
GWHAAZE00000007	exon	50148357	50148483	+
GWHAAZE00000007	exon	50148688	50148752	+
GWHAAZE00000007	exon	50149028	50149389	+
GWHAAZE00000007	exon	50150064	50150234	+
GWHAAZE00000007	exon	50151310	50151434	+
GWHAAZE00000007	exon	50151606	50151654	+
GWHAAZE00000007	exon	50152174	50152332	+
GWHAAZE00000007	exon	50152526	50152611	+
GWHAAZE00000007	exon	50153197	50153268	+
GWHAAZE00000007	exon	50153697	50153846	+
GWHAAZE00000007	exon	50155273	50155296	+
GWHAAZE00000007	exon	50155675	50155918	+
GWHAAZE00000007	CDS	50140243	50140438	+
GWHAAZE00000007	CDS	50148357	50148483	+
GWHAAZE00000007	CDS	50148688	50148752	+
GWHAAZE00000007	CDS	50149028	50149389	+
GWHAAZE00000007	CDS	50150064	50150234	+
GWHAAZE00000007	CDS	50151310	50151434	+
GWHAAZE00000007	CDS	50151606	50151654	+
GWHAAZE00000007	CDS	50152174	50152332	+
GWHAAZE00000007	CDS	50152526	50152611	+
GWHAAZE00000007	CDS	50153197	50153268	+
GWHAAZE00000007	CDS	50153697	50153846	+
GWHAAZE00000007	CDS	50155273	50155296	+
GWHAAZE00000007	CDS	50155675	50155918	+

Transcript Sequence
>GWHTAAZE024860 ATGATGATGAAAAATAACACCACCACCAACAACACAACGTCGTCGTCGTCGGATAAGGGTCGGGCCCTCCCGGTGGACCCCAATCTCCCCAGATGGGCCTGCCAGAACTGTCGCCACTCTCTCTGCATCGTCGGCGTCGATTCTTACGCTGACAAGTTCCTCAACGATTCCTCCTCATCCTCGGTTCATCGTTCCGTTGATCAGATACCAACCATCTATGCCGCCTTCAACCCTGACCACCGTCGGTCGGTCGTCTTCTCGGACCGAACTACTCCAATTTCCGGCAGCTTACTGAAACCAACTGAACTGATCGGTTGGTTCAGTGTGTTGCTCCTTTTCTCTCATGGTGGCTGTGAGAATTTCCAATTATGTTTGAGCGGACTTGAGGGAATGCAGGGTTCTTCAATGCATGGTGTAGGCAGTGTGTTTTCATCGAGGATGGATCATTCATACGTTGTGTTGCCGAAGCAAAAGAATCAGATACCAGGGGGGGCTCCACCTCGTCCTCGCAGTGGAGCTGATACAAGCCAGTCTGGGAAGGCAATGGAAGAATCATTTGTGGTGTTGCCTCCACCCGCTGCTTCTGTGTACAAGTGCGAGCCTGGGTCTGATGGAGGAAGTGGGACCCATTTACCATCACATGATGATGGTGGACCCAACAGTGCTCCTATGCAAGCAAACAATTCTGGGTTTCACTCCACTATAACTGTCCTGAACCGTGCATTTGATATTGCTACTACCCAGACACAGGTTGAGCAACCTTTATGCCTGGAGTGCATGAGGGTACTATCTGAAAAACTTGATAAGGAGGTTGAAGACGTAAACAAGGACATAGAAGCCTATGAAGCTCTCCTTCAGCGCTTGGAGGGGGATGAACGGAATGTTCTAAGTGAGGCTGATTTTTTGAAGGAGAAACTAAAGATAGAGGAAGAAGAAAGGAAGCTTGAAGCAGCCATTGAAGAAACGGAAAAACAGTGTACAGAAGTAACTGCTGAATTGAAGGAACTTGAATTTAAATCTAATCGCTTCCAAGAGTTGGAGGAGCGGTATTGGCACGAGTTCAATAATTTTCAGTTCCAGTTAATTTCACATCAGGAAGAGAGGGACGCAATTTTGGCAAAGACTGAAGTTTCGCAAGCACATTTAGAATTGTTGAAACGAACTAATGTGCTCAACGATGCCTTCCCTATATGGCATGATGGAGAGTTTGGAACAATTAATACTTTCCGGCTCGGCAGACTTCCAAAAATTCCGGTTGAGTGGGATGAGATAAATGCTGCGTGGGGCCAAGCTTGCCTTCTCCTCCATACGATGGCTCAATATTTCCGGCCAAAGTTCCAATATCGGATAAAAATTCTTCCTATGGGGAGTTACCCTCGAATTATGGACAGTAGCAACAATACTTACGAGCTGTTTGGTCCGGTTAATTTGTTTTGGAGCACTCGCTATGACAAAGCAATGACATTGTTCTTAACTTGTCTTAAGGATTTTTCGGAATTTGCATATTCTAAGGATGTTGATAACAACTTACCGCCTGAGAGACGCTTTAGCCTTCCCTACCAGATTGAGGATGGCAAAGTTATAAGGATTGAGAATGGGGAACCTAAAGCCTATTCAATCACACAGAGTTTCAACAAACAGGAGAACTGGACCAAAGCTCTCAAGTACACCCTTTGCAACTTGAAATGGGCTCTCTATTGGTTTGTTGGCAACACTAGTTTCCAGTCTGCTTCGGCCACCATTTCTTCACATTCTGAGGTCTCGGGCGCTAGCTACTTGTACAAAAAGCGTGTTCCTGACCCCAAGTCCGCATCAAAAAACCCATGTTGA

Network for GWHGAAZE024826

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17675.2	APG6_N	254	382	1.90E-24
PF04111.13	APG6	385	568	5.40E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08334	BECN, VPS30, ATG6	Apelin signaling pathway	map04371
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Mitophagy - animal	map04137
		Apoptosis - multiple species	map04215

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.804
	SRR3591706	second leaf	8.162
	SRR3591707	mature leaf	14.247
	SRR3591708	Shoot apex	12.836
	SRR3591709	Stem	22.770
	SRR3591710	White floral bud	20.387
	SRR3591711	White flower	19.545
	SRR3591712	Green floral bud	12.033
	SRR3591713	Yellow flower	19.458
SRP173429	SRR8316895	Juvenile bud stage	7.729
	SRR8316896	Juvenile bud stage	11.176
	SRR8316897	Juvenile bud stage	4.479
	SRR8316894	Third green stage	4.525
	SRR8316900	Third green stage	10.083
	SRR8316901	Third green stage	10.633
	SRR8316898	Complete white stage	7.775
	SRR8316899	Complete white stage	18.896
	SRR8316903	Complete white stage	12.507
	SRR8316902	Silver flowering stage	8.605
	SRR8316904	Silver flowering stage	14.226
	SRR8316905	Silver flowering stage	5.704
	SRR8316906	Gold flowering stage	21.127
	SRR8316907	Gold flowering stage	18.413
	SRR8316908	Gold flowering stage	18.137
SRP132670	SRR6706286	Control	13.454
	SRR6706287	Light intensity 50%	12.933
	SRR6706288	Light intensity 20%	12.187
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.815
	CNS0095593	Slightly white alabastrum(diploid) 2	8.980
	CNS0095594	Slightly white alabastrum(diploid) 3	9.133
	CNS0095595	Whole white alabastrum(diploid) 2	8.412
	CNS0095596	Whole white alabastrum(diploid) 3	4.958
	CNS0095597	Whole white alabastrum(diploid) 4	8.661
	CNS0095598	Silvery flower (diploied) 1	13.988
	CNS0095599	Silvery flower (diploied) 2	12.478
	CNS0095600	Silvery flower (diploied) 3	16.958
	CNS0095601	Golden flower (diploid) 1	12.366
	CNS0095602	Golden flower (diploid) 2	17.560
	CNS0095603	Golden flower (diploid) 3	15.100
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.256
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.627
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.561
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.729
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.843
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.693
	CNS0095610	Silvery flower (tetraploid) 1	21.176
	CNS0095611	Silvery flower (tetraploid) 2	21.730
	CNS0095612	Silvery flower (tetraploid) 3	18.343
	CNS0095613	Golden flower (tetraploid) 1	13.837
	CNS0095614	Golden flower (tetraploid) 2	16.867
	CNS0095615	Golden flower (tetraploid) 3	23.549
CRA001975	CRR073297	Stem 1	12.319
	CRR073298	Stem 2	10.536
	CRR073299	Stem 3	10.423
	CRR073300	Leaf 1	12.694
	CRR073301	Leaf 2	13.061
	CRR073302	Leaf 3	8.814
	CRR073303	Juvenile bud 1	11.530
	CRR073304	Juvenile bud 2	10.618
	CRR073305	Juvenile bud 3	13.201
	CRR073306	Third green 1	7.895
	CRR073307	Third green 2	6.856
	CRR073308	Third green 3	7.009
	CRR073309	Second white 1	5.868
	CRR073310	Second white 2	9.046
	CRR073311	Second white 3	10.370
	CRR073312	Silver flowering 1	6.974
	CRR073313	Silver flowering 2	6.227
	CRR073314	Silver flowering 3	7.648
	CRR073315	Gold flowering 1	12.681
	CRR073316	Gold flowering 2	18.938
	CRR073317	Gold flowering 3	11.076
	CRR073318	Tawny withering 1	11.526
	CRR073319	Tawny withering 2	10.889
	CRR073320	Tawny withering 3	11.291