Gene detail

Detail information of GWHGAAZE024830

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093566.1	8.0773E-107	PREDICTED: F-box/kelch-repeat protein At3g06240-like [Sesamum indicum]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	1E-30	F-box protein At3g07870
trEMBL	tr\|M5WUE8\|M5WUE8_PRUPE	1E-58	Uncharacterized protein {ECO:0000313\|EMBL:EMJ17309.1}
TAIR10	AT3G07870.1	6E-21	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50245909	50247021	+
GWHAAZE00000007	mRNA	50245909	50247021	+
GWHAAZE00000007	exon	50245909	50247021	+
GWHAAZE00000007	CDS	50245909	50247021	+

Transcript Sequence
>GWHTAAZE024864 ATGTCAAAAGAACTCAATCTTTCCAAACTTCCTAGAGACGTAACCTTCGATATACTCTCAAGACTCCCCATCAAAACCCTAATCCAATTCACTTGCGTTTCCAAATCTTCCCTACCCTTAATTTCCCACCCTCACTTCATCAAGCTTCACCTTTCCAAATCCACCACCAAGAACTTCCTCCTCTACTACGAATCAATCGATTACACCAGATACTCCTTTTCTTTACACTGCCCCAATACCTTAATTGAAAGATCCAAACTTGAATTCCCCTTCGAAAGTGTACATGGGTACTTTCGAATTGTTGGTTCTTGTAATGGGTTAGTTTGTTTTTTCGACACTAATTACTTTACTTATGTGGGCACTGTTTTTCTTTGGAACCCTAGTATTAGGAAATTCTGGGTTTTAAAGAATTGTCAAAATAAGAATGATAGTTTGTCTCATATGGTTATTGGGTTTGGGTTTGTTCCCAAGGTTGATGATTTTAAGGTTGTAAAGATTGTTTATGATTTGGATTTTGAGGTGAATCCTGATGTTTTCGTTTATACTTTAAAGGATGATTCTTGGAGGAAAATTGAGGGCTTTGCCCCTTGTTTTCTTCCTAAACGTTGGACCAATAACGTGTTTGTGAAAAGTTCTGTGAATTGGTTGGCTTCTAAGAGTTCCAAGTTGGGTGACATTTATGATTCTATTATGGCTTTTGATTTGGGGGATGAGACTTTTCGGGCTATGGAATTGCCTGATATTCACGGGGATAATTATGATGAAATGTGCTTGTGTTCTTCTGTTTGTGGCGAATCGTTGTGTTTGTTCTTTTGTTTTCGCCAGATGGATTGTGACAGATGGGAAATGTGGTTGATGAAGGAGTATGGAGTGGCAGATTCGTGGACTAAACAATTCAACATAGTGCAGTCTCATATATCGTTGCCGTTGTGTTTTATTGATAGTGGGGAAGTTTTACTTGTAATGAAGAATGGGAAGCTGGTCATTTATGATCCTAATAAGCAAGAAATTAAGGATTGCGGAATATGGGGCACGCCAGGTTCATTTCGCTTAGTGAATTACATGAAAAGCCTGGTTCTGCTTGATTGTAGATACAACAAAATCACAAGGTAA

Network for GWHGAAZE024830

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	41	8.10E-05
PF07734.14	FBA_1	207	337	1.80E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.852
	SRR3591706	second leaf	5.100
	SRR3591707	mature leaf	11.250
	SRR3591708	Shoot apex	6.512
	SRR3591709	Stem	31.222
	SRR3591710	White floral bud	25.228
	SRR3591711	White flower	35.722
	SRR3591712	Green floral bud	10.014
	SRR3591713	Yellow flower	50.803
SRP173429	SRR8316895	Juvenile bud stage	3.755
	SRR8316896	Juvenile bud stage	4.439
	SRR8316897	Juvenile bud stage	4.183
	SRR8316894	Third green stage	2.003
	SRR8316900	Third green stage	6.047
	SRR8316901	Third green stage	6.247
	SRR8316898	Complete white stage	11.182
	SRR8316899	Complete white stage	20.561
	SRR8316903	Complete white stage	20.838
	SRR8316902	Silver flowering stage	15.255
	SRR8316904	Silver flowering stage	25.158
	SRR8316905	Silver flowering stage	17.341
	SRR8316906	Gold flowering stage	50.547
	SRR8316907	Gold flowering stage	41.998
	SRR8316908	Gold flowering stage	43.692
SRP132670	SRR6706286	Control	1.307
	SRR6706287	Light intensity 50%	1.736
	SRR6706288	Light intensity 20%	1.549
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.501
	CNS0095593	Slightly white alabastrum(diploid) 2	7.380
	CNS0095594	Slightly white alabastrum(diploid) 3	5.557
	CNS0095595	Whole white alabastrum(diploid) 2	6.146
	CNS0095596	Whole white alabastrum(diploid) 3	4.628
	CNS0095597	Whole white alabastrum(diploid) 4	5.240
	CNS0095598	Silvery flower (diploied) 1	9.603
	CNS0095599	Silvery flower (diploied) 2	12.532
	CNS0095600	Silvery flower (diploied) 3	37.979
	CNS0095601	Golden flower (diploid) 1	19.432
	CNS0095602	Golden flower (diploid) 2	39.602
	CNS0095603	Golden flower (diploid) 3	36.303
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.630
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.250
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.539
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.508
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.180
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.520
	CNS0095610	Silvery flower (tetraploid) 1	39.437
	CNS0095611	Silvery flower (tetraploid) 2	46.798
	CNS0095612	Silvery flower (tetraploid) 3	43.559
	CNS0095613	Golden flower (tetraploid) 1	28.006
	CNS0095614	Golden flower (tetraploid) 2	38.376
	CNS0095615	Golden flower (tetraploid) 3	59.843
CRA001975	CRR073297	Stem 1	5.279
	CRR073298	Stem 2	5.684
	CRR073299	Stem 3	3.054
	CRR073300	Leaf 1	8.775
	CRR073301	Leaf 2	9.680
	CRR073302	Leaf 3	2.476
	CRR073303	Juvenile bud 1	7.096
	CRR073304	Juvenile bud 2	9.381
	CRR073305	Juvenile bud 3	4.807
	CRR073306	Third green 1	17.217
	CRR073307	Third green 2	11.668
	CRR073308	Third green 3	13.325
	CRR073309	Second white 1	15.848
	CRR073310	Second white 2	13.959
	CRR073311	Second white 3	15.942
	CRR073312	Silver flowering 1	9.660
	CRR073313	Silver flowering 2	5.286
	CRR073314	Silver flowering 3	6.954
	CRR073315	Gold flowering 1	5.763
	CRR073316	Gold flowering 2	6.443
	CRR073317	Gold flowering 3	4.699
	CRR073318	Tawny withering 1	5.267
	CRR073319	Tawny withering 2	6.093
	CRR073320	Tawny withering 3	5.427