Gene detail

Detail information of GWHGAAZE024831

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011037871.1	1.5831E-115	PREDICTED: probable WRKY transcription factor 46 [Populus euphratica]
Swissprot	tr\|Q9SKD9\|WRK46_ARATH	7E-40	Probable WRKY transcription factor 46
trEMBL	tr\|B9I8V9\|B9I8V9_POPTR	3E-114	Uncharacterized protein {ECO:0000313\|EMBL:EEE99167.2}
TAIR10	AT4G23810.1	8E-35	WRKY family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50261043	50262986	+
GWHAAZE00000007	mRNA	50261043	50262986	+
GWHAAZE00000007	exon	50261043	50261368	+
GWHAAZE00000007	exon	50261490	50261621	+
GWHAAZE00000007	exon	50262377	50262986	+
GWHAAZE00000007	CDS	50261043	50261368	+
GWHAAZE00000007	CDS	50261490	50261621	+
GWHAAZE00000007	CDS	50262377	50262986	+

Transcript Sequence
>GWHTAAZE024865 ATGAAAAGGGCAATGGATTTGGAGCAAGAAACACTTGTTAAGGAGATAAGCCAAGGGAGGGAGCTAGTAAACCAGCTCAAAAACAACCTTGACACAATTTCTTCTTCCCCACAAACTTGTGAGCTTCTCCTTCAGAAAATACTTTCTTCCTATGAAAAGGCACTTTCAATGCTAAATTGGAATGCTTTAGTGGGAGAACAATTGCCTCCTTTGAAAACCACCTTAGAGCCACCAAATTCCCATTCTGATGGAACTAGTCAAGGGAGTGAGAAAATTGACCAAGATTCAAGGGAAGACCACACCCAGAAAGATGTGTTCAAGAAGAGGAAGTTGAGTTTGACAAAATGGAGTGAACAAGTGAACATTTGCTCTGGAAAAGGGAAAGGAAATCCTGTTGATGATGGTCATAGTTGGAGAAAATATGGGCAGAAAGATATCCTTGGTGCTAATTTCCCTAGAGCATATTATCGATGTGCCCATCGACATACGCAAGGCTGTTTGGCAACAAAACAAGTCCAAAAATCAAATGAAGATCCATCAATCATTGAAATAAGTTATAAAGGAAGACACACCTGCATCCAATCCCAAGGAAAAGAAAAGCCAGAGGAAAACAAAGTCCACTTTCCTCAGCCAGAACAAGTTCAAACACAAACAGAGGAAATTTTCTTCAACTTTGGAGCATGGCTTAAAACAGAGGACTTGGCAGCCACCAGTGAGGAAGTCTTTGCTCAATTTTCCTTTCCTCCCACACCATTTGGATCCGAGGTCGTGGAAAGTGATTTCTTTGCAGAATCTGCCAAGGAAAACAATTTCATGGGTGGTGGTTGTTATTCGCCCGCATTTATATCGCCAGCAACATCAGAGTCCAATTATTTTTCACTGTCACCATGTGATTTGAACAACCTTGGATTGACCACTAATTTGCAAAGCTCGGATTCTGATTTTGGTGAGATACTTTCGGCCCCAAATTCAGTCACTAATTCTCCTATTGAAAATTTGGATTTCTTACTTGATAAAGTGGATTTTGATTCAAGTTTACCACTCGACATCTTGGAATCTTTTTCCTAG

Network for GWHGAAZE024831

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	133	192	1.30E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.221
	SRR3591706	second leaf	42.817
	SRR3591707	mature leaf	19.960
	SRR3591708	Shoot apex	30.484
	SRR3591709	Stem	159.580
	SRR3591710	White floral bud	56.309
	SRR3591711	White flower	90.721
	SRR3591712	Green floral bud	34.521
	SRR3591713	Yellow flower	13.435
SRP173429	SRR8316895	Juvenile bud stage	90.939
	SRR8316896	Juvenile bud stage	45.042
	SRR8316897	Juvenile bud stage	76.536
	SRR8316894	Third green stage	16.375
	SRR8316900	Third green stage	22.259
	SRR8316901	Third green stage	32.440
	SRR8316898	Complete white stage	1.606
	SRR8316899	Complete white stage	92.174
	SRR8316903	Complete white stage	3.893
	SRR8316902	Silver flowering stage	4.854
	SRR8316904	Silver flowering stage	3.315
	SRR8316905	Silver flowering stage	1.688
	SRR8316906	Gold flowering stage	8.582
	SRR8316907	Gold flowering stage	6.349
	SRR8316908	Gold flowering stage	9.125
SRP132670	SRR6706286	Control	5.107
	SRR6706287	Light intensity 50%	10.611
	SRR6706288	Light intensity 20%	7.525
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.155
	CNS0095593	Slightly white alabastrum(diploid) 2	85.305
	CNS0095594	Slightly white alabastrum(diploid) 3	75.452
	CNS0095595	Whole white alabastrum(diploid) 2	56.628
	CNS0095596	Whole white alabastrum(diploid) 3	9.672
	CNS0095597	Whole white alabastrum(diploid) 4	26.146
	CNS0095598	Silvery flower (diploied) 1	203.567
	CNS0095599	Silvery flower (diploied) 2	158.923
	CNS0095600	Silvery flower (diploied) 3	75.313
	CNS0095601	Golden flower (diploid) 1	239.227
	CNS0095602	Golden flower (diploid) 2	149.903
	CNS0095603	Golden flower (diploid) 3	147.078
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.435
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.383
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.256
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.785
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.900
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.831
	CNS0095610	Silvery flower (tetraploid) 1	7.049
	CNS0095611	Silvery flower (tetraploid) 2	8.056
	CNS0095612	Silvery flower (tetraploid) 3	18.740
	CNS0095613	Golden flower (tetraploid) 1	2.896
	CNS0095614	Golden flower (tetraploid) 2	5.999
	CNS0095615	Golden flower (tetraploid) 3	1.110
CRA001975	CRR073297	Stem 1	23.129
	CRR073298	Stem 2	22.405
	CRR073299	Stem 3	22.128
	CRR073300	Leaf 1	24.498
	CRR073301	Leaf 2	33.416
	CRR073302	Leaf 3	18.056
	CRR073303	Juvenile bud 1	21.729
	CRR073304	Juvenile bud 2	17.370
	CRR073305	Juvenile bud 3	34.087
	CRR073306	Third green 1	13.596
	CRR073307	Third green 2	6.625
	CRR073308	Third green 3	11.115
	CRR073309	Second white 1	4.991
	CRR073310	Second white 2	7.817
	CRR073311	Second white 3	5.172
	CRR073312	Silver flowering 1	14.295
	CRR073313	Silver flowering 2	11.467
	CRR073314	Silver flowering 3	10.143
	CRR073315	Gold flowering 1	54.980
	CRR073316	Gold flowering 2	60.833
	CRR073317	Gold flowering 3	68.603
	CRR073318	Tawny withering 1	51.654
	CRR073319	Tawny withering 2	149.351
	CRR073320	Tawny withering 3	111.753