Detail information of GWHGAAZE024835


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007051612.10Indole-3-acetic acid-amido synthetase GH3.5, putative isoform 1 [Theobroma cacao]
COGYP_003444757.19E-25alpha-L-glutamate ligase
Swissprottr|Q6I581|GH35_ORYSJ0Probable indole-3-acetic acid-amido synthetase GH3.5
trEMBLtr|A0A061DSK9|A0A061DSK9_THECC0Indole-3-acetic acid-amido synthetase GH3.5, putative isoform 1 {ECO:0000313|EMBL:EOX95769.1}
TAIR10AT2G46370.40Auxin-responsive GH3 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5033429550338862-
GWHAAZE00000007mRNA5033429550338862-
GWHAAZE00000007exon5033429550335030-
GWHAAZE00000007exon5033687550337695-
GWHAAZE00000007exon5033835050338451-
GWHAAZE00000007exon5033856750338862-
GWHAAZE00000007CDS5033856750338862-
GWHAAZE00000007CDS5033835050338451-
GWHAAZE00000007CDS5033687550337695-
GWHAAZE00000007CDS5033448950335030-
GWHAAZE00000007three_prime_UTR5033429550334488-
Transcript Sequence

Network for GWHGAAZE024835

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03321.14GH3175611.10E-188
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14506JAR1_4_6 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.382
SRR3591706second leaf20.970
SRR3591707mature leaf55.389
SRR3591708Shoot apex9.042
SRR3591709Stem73.306
SRR3591710White floral bud31.909
SRR3591711White flower44.510
SRR3591712Green floral bud31.460
SRR3591713Yellow flower25.764
SRP173429 SRR8316895Juvenile bud stage 18.981
SRR8316896Juvenile bud stage 30.437
SRR8316897Juvenile bud stage 19.108
SRR8316894Third green stage 16.778
SRR8316900Third green stage 62.728
SRR8316901Third green stage 53.285
SRR8316898Complete white stage 9.490
SRR8316899Complete white stage 99.257
SRR8316903Complete white stage 16.914
SRR8316902Silver flowering stage18.429
SRR8316904Silver flowering stage19.731
SRR8316905Silver flowering stage11.042
SRR8316906Gold flowering stage 38.538
SRR8316907Gold flowering stage 32.118
SRR8316908Gold flowering stage 30.428
SRP132670SRR6706286Control39.063
SRR6706287Light intensity 50%36.468
SRR6706288Light intensity 20%33.625
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.941
CNS0095593Slightly white alabastrum(diploid) 212.363
CNS0095594Slightly white alabastrum(diploid) 311.445
CNS0095595Whole white alabastrum(diploid) 210.718
CNS0095596Whole white alabastrum(diploid) 38.431
CNS0095597Whole white alabastrum(diploid) 48.319
CNS0095598Silvery flower (diploied) 122.425
CNS0095599Silvery flower (diploied) 216.161
CNS0095600Silvery flower (diploied) 324.894
CNS0095601Golden flower (diploid) 115.712
CNS0095602Golden flower (diploid) 224.549
CNS0095603Golden flower (diploid) 324.453
CNS0095604Slightly white alabastrum(tetraploid) 110.081
CNS0095605Slightly white alabastrum(tetraploid) 26.717
CNS0095606Slightly white alabastrum(tetraploid) 332.028
CNS0095607Whole white alabastrum(tetraploid) 15.510
CNS0095608Whole white alabastrum(tetraploid) 23.415
CNS0095609Whole white alabastrum(tetraploid) 310.604
CNS0095610Silvery flower (tetraploid) 134.157
CNS0095611Silvery flower (tetraploid) 222.897
CNS0095612Silvery flower (tetraploid) 37.128
CNS0095613Golden flower (tetraploid) 110.319
CNS0095614Golden flower (tetraploid) 227.405
CNS0095615Golden flower (tetraploid) 312.678
CRA001975CRR073297Stem 127.109
CRR073298Stem 237.206
CRR073299Stem 333.411
CRR073300Leaf 128.818
CRR073301Leaf 218.807
CRR073302Leaf 321.027
CRR073303Juvenile bud 121.255
CRR073304Juvenile bud 214.087
CRR073305Juvenile bud 334.751
CRR073306Third green 16.177
CRR073307Third green 26.879
CRR073308Third green 36.660
CRR073309Second white 14.474
CRR073310Second white 24.532
CRR073311Second white 33.446
CRR073312Silver flowering 14.336
CRR073313Silver flowering 23.669
CRR073314Silver flowering 34.946
CRR073315Gold flowering 122.899
CRR073316Gold flowering 225.046
CRR073317Gold flowering 325.931
CRR073318Tawny withering 121.624
CRR073319Tawny withering 225.140
CRR073320Tawny withering 319.328