Gene detail

Detail information of GWHGAAZE024842

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007218055.1	3.1992E-162	hypothetical protein PRUPE_ppa006173mg [Prunus persica]
Swissprot	tr\|Q99089\|CPRF1_PETCR	7E-152	Common plant regulatory factor 1
trEMBL	tr\|M5X011\|M5X011_PRUPE	1E-162	Uncharacterized protein {ECO:0000313\|EMBL:EMJ19254.1}
TAIR10	AT2G46270.1	1E-72	G-box binding factor 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50443463	50447576	-
GWHAAZE00000007	mRNA	50443463	50447576	-
GWHAAZE00000007	exon	50443463	50443690	-
GWHAAZE00000007	exon	50444195	50444320	-
GWHAAZE00000007	exon	50444441	50444518	-
GWHAAZE00000007	exon	50445159	50445403	-
GWHAAZE00000007	exon	50446188	50446236	-
GWHAAZE00000007	exon	50446359	50446413	-
GWHAAZE00000007	exon	50446523	50446683	-
GWHAAZE00000007	exon	50446866	50446943	-
GWHAAZE00000007	exon	50447050	50447148	-
GWHAAZE00000007	exon	50447286	50447330	-
GWHAAZE00000007	exon	50447517	50447576	-
GWHAAZE00000007	CDS	50447517	50447576	-
GWHAAZE00000007	CDS	50447286	50447330	-
GWHAAZE00000007	CDS	50447050	50447148	-
GWHAAZE00000007	CDS	50446866	50446943	-
GWHAAZE00000007	CDS	50446523	50446683	-
GWHAAZE00000007	CDS	50446359	50446413	-
GWHAAZE00000007	CDS	50446188	50446236	-
GWHAAZE00000007	CDS	50445159	50445403	-
GWHAAZE00000007	CDS	50444441	50444518	-
GWHAAZE00000007	CDS	50444195	50444320	-
GWHAAZE00000007	CDS	50443463	50443690	-

Transcript Sequence
>GWHTAAZE024876 ATGGAAAACAGTGAAGAGGCTAAGTCTGTTAAGCCTGAGAAACCGTCTTCACCAGCGCCGGATCAGGCCAATTATCATGTTTATCCTGATTGGGCTGCCATGCAGGCGTACTATGGCCAAAGAATGCCTGTGCCACCATATTTCAATTCAGCTGTTGCATCTGGTCATCATCCCCCTCACCCTTATATGTGGGGACCACCACAGCCTATGATGCCACCTTATGGAGCACCTTATGCTGTCTATGCACATGGAGGCGTTTATGCACATCCTGGAGTGCCTCTTCCGGCTACTCCTTTGAGCATGGATGCACCTGCGAAATCATCGGGAAATACAGACCGAGGCTTAATGAAAAAGTTGAAAGGCTTTGACGGGTTGGCAATGTCCATAGGCAATGATAATGCTGACAGTGCTGAGGGCGGAACTGATCATGGGCTCTCTCAAAGTGGGACTGGTGAGACTGAAGGTTCCAGTGATGGAAGTGATGGGAATACCGCAGGGACTCGTCAAAATGGTGGGAAAAGAAGCCGGGAGGGAACACCTAATATTGTAACTAGAGATGACAAGAATGAGAGAGAGAATGGTCCAGTTACTGCCACTGAAGTTAAAGGAGCTTCCGAAATAGTGGTGGGAGTAACTGTGGCTCCTAAGATTATGGGAAACATGGTGGGAACGGTAGTTTCTCCTGGTATGAACATGGCATTGGAACTTAGCAATCCTTCACCTGCTGTAAAGACTAGTCCAACAAGCAGTCAACCATCTTGTACGGTTATACCAAATGAAACCTGGACACAGAATGAACGGGAGCTGAAAAGGGAGAGGAGGAAACAGTCCAATCGAGAATCTGCAAGAAGGTCAAGATTGAGGAAGCAGGCTGAGGCTGAAGAACTTGCAATTAAAGTTGAATCATTAACTGCTGAAAATATGACACTCAAGTCTGAAATTAACCTGTTAACTGAGAAGTCAGAGAAACTCAAGCTTGAAAATGCTAAATTGATGGAGAAAATGAAAGGTGCGCAACTAGGGCAAACAGAGGAACTTGCTGCTTTAAGTAAAGTTGATGGTAAGAAAGTGGTTCCTCTTAGTACAGCTAACCTACTCTCTCGAGTTAACAACTCCGGTCCTGCTGAAGGAGAAGGCAGCGAAATATACGAGAAAAACTCAGGCGCGAAGCTCCGTCAGCTCCTCAATGCTAGCCCACGGACCGACGCTGTGGCTGCGGGATAA

Network for GWHGAAZE024842

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07777.12	MFMR	1	93	4.40E-31
PF16596.6	MFMR_assoc	112	247	1.10E-26
PF00170.22	bZIP_1	266	328	1.10E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	76.469
	SRR3591706	second leaf	46.397
	SRR3591707	mature leaf	38.727
	SRR3591708	Shoot apex	66.727
	SRR3591709	Stem	40.000
	SRR3591710	White floral bud	57.425
	SRR3591711	White flower	41.111
	SRR3591712	Green floral bud	37.148
	SRR3591713	Yellow flower	18.278
SRP173429	SRR8316895	Juvenile bud stage	49.593
	SRR8316896	Juvenile bud stage	58.079
	SRR8316897	Juvenile bud stage	44.693
	SRR8316894	Third green stage	19.037
	SRR8316900	Third green stage	53.682
	SRR8316901	Third green stage	59.768
	SRR8316898	Complete white stage	32.532
	SRR8316899	Complete white stage	94.737
	SRR8316903	Complete white stage	68.598
	SRR8316902	Silver flowering stage	38.688
	SRR8316904	Silver flowering stage	43.516
	SRR8316905	Silver flowering stage	16.991
	SRR8316906	Gold flowering stage	40.122
	SRR8316907	Gold flowering stage	29.933
	SRR8316908	Gold flowering stage	32.818
SRP132670	SRR6706286	Control	40.352
	SRR6706287	Light intensity 50%	41.395
	SRR6706288	Light intensity 20%	35.426
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.411
	CNS0095593	Slightly white alabastrum(diploid) 2	35.138
	CNS0095594	Slightly white alabastrum(diploid) 3	34.092
	CNS0095595	Whole white alabastrum(diploid) 2	34.710
	CNS0095596	Whole white alabastrum(diploid) 3	18.899
	CNS0095597	Whole white alabastrum(diploid) 4	29.023
	CNS0095598	Silvery flower (diploied) 1	49.118
	CNS0095599	Silvery flower (diploied) 2	56.851
	CNS0095600	Silvery flower (diploied) 3	44.970
	CNS0095601	Golden flower (diploid) 1	78.303
	CNS0095602	Golden flower (diploid) 2	63.840
	CNS0095603	Golden flower (diploid) 3	62.166
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.757
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.160
	CNS0095606	Slightly white alabastrum(tetraploid) 3	92.022
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.085
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.754
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.999
	CNS0095610	Silvery flower (tetraploid) 1	46.497
	CNS0095611	Silvery flower (tetraploid) 2	53.619
	CNS0095612	Silvery flower (tetraploid) 3	9.316
	CNS0095613	Golden flower (tetraploid) 1	20.337
	CNS0095614	Golden flower (tetraploid) 2	35.487
	CNS0095615	Golden flower (tetraploid) 3	23.442
CRA001975	CRR073297	Stem 1	34.473
	CRR073298	Stem 2	32.722
	CRR073299	Stem 3	37.663
	CRR073300	Leaf 1	51.022
	CRR073301	Leaf 2	43.327
	CRR073302	Leaf 3	33.545
	CRR073303	Juvenile bud 1	42.095
	CRR073304	Juvenile bud 2	36.120
	CRR073305	Juvenile bud 3	42.800
	CRR073306	Third green 1	20.841
	CRR073307	Third green 2	21.844
	CRR073308	Third green 3	20.655
	CRR073309	Second white 1	3.564
	CRR073310	Second white 2	6.684
	CRR073311	Second white 3	4.322
	CRR073312	Silver flowering 1	2.135
	CRR073313	Silver flowering 2	5.178
	CRR073314	Silver flowering 3	2.140
	CRR073315	Gold flowering 1	12.709
	CRR073316	Gold flowering 2	19.229
	CRR073317	Gold flowering 3	8.912
	CRR073318	Tawny withering 1	27.773
	CRR073319	Tawny withering 2	41.554
	CRR073320	Tawny withering 3	22.524