Detail information of GWHGAAZE024853


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009597583.13.17538E-62PREDICTED: RING-H2 finger protein ATL67-like [Nicotiana tomentosiformis]
Swissprottr|Q9M313|ATL68_ARATH2E-56RING-H2 finger protein ATL68
trEMBLtr|K7MEZ0|K7MEZ0_SOYBN3E-63Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G03430.2}
TAIR10AT3G61550.16E-29RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5066174050662180+
GWHAAZE00000007mRNA5066174050662180+
GWHAAZE00000007exon5066174050662180+
GWHAAZE00000007CDS5066174050662180+
Transcript Sequence

Network for GWHGAAZE024853

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2761199.50E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.762
SRR3591706second leaf20.784
SRR3591707mature leaf19.026
SRR3591708Shoot apex21.364
SRR3591709Stem9.952
SRR3591710White floral bud32.768
SRR3591711White flower12.254
SRR3591712Green floral bud38.397
SRR3591713Yellow flower4.578
SRP173429 SRR8316895Juvenile bud stage 14.508
SRR8316896Juvenile bud stage 20.803
SRR8316897Juvenile bud stage 8.653
SRR8316894Third green stage 12.930
SRR8316900Third green stage 38.002
SRR8316901Third green stage 35.805
SRR8316898Complete white stage 11.475
SRR8316899Complete white stage 53.483
SRR8316903Complete white stage 19.753
SRR8316902Silver flowering stage2.559
SRR8316904Silver flowering stage4.448
SRR8316905Silver flowering stage1.827
SRR8316906Gold flowering stage 6.697
SRR8316907Gold flowering stage 5.075
SRR8316908Gold flowering stage 9.049
SRP132670SRR6706286Control29.808
SRR6706287Light intensity 50%34.857
SRR6706288Light intensity 20%41.368
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.299
CNS0095593Slightly white alabastrum(diploid) 225.091
CNS0095594Slightly white alabastrum(diploid) 321.767
CNS0095595Whole white alabastrum(diploid) 223.255
CNS0095596Whole white alabastrum(diploid) 318.685
CNS0095597Whole white alabastrum(diploid) 426.031
CNS0095598Silvery flower (diploied) 121.850
CNS0095599Silvery flower (diploied) 213.852
CNS0095600Silvery flower (diploied) 322.499
CNS0095601Golden flower (diploid) 114.814
CNS0095602Golden flower (diploid) 214.244
CNS0095603Golden flower (diploid) 317.955
CNS0095604Slightly white alabastrum(tetraploid) 138.275
CNS0095605Slightly white alabastrum(tetraploid) 228.551
CNS0095606Slightly white alabastrum(tetraploid) 366.815
CNS0095607Whole white alabastrum(tetraploid) 119.414
CNS0095608Whole white alabastrum(tetraploid) 213.358
CNS0095609Whole white alabastrum(tetraploid) 353.415
CNS0095610Silvery flower (tetraploid) 128.909
CNS0095611Silvery flower (tetraploid) 224.262
CNS0095612Silvery flower (tetraploid) 339.279
CNS0095613Golden flower (tetraploid) 112.772
CNS0095614Golden flower (tetraploid) 220.710
CNS0095615Golden flower (tetraploid) 35.027
CRA001975CRR073297Stem 127.134
CRR073298Stem 226.257
CRR073299Stem 326.897
CRR073300Leaf 139.181
CRR073301Leaf 232.748
CRR073302Leaf 330.813
CRR073303Juvenile bud 120.547
CRR073304Juvenile bud 224.868
CRR073305Juvenile bud 325.100
CRR073306Third green 110.739
CRR073307Third green 210.091
CRR073308Third green 312.958
CRR073309Second white 11.187
CRR073310Second white 26.359
CRR073311Second white 32.102
CRR073312Silver flowering 12.935
CRR073313Silver flowering 22.471
CRR073314Silver flowering 32.788
CRR073315Gold flowering 148.426
CRR073316Gold flowering 236.144
CRR073317Gold flowering 339.862
CRR073318Tawny withering 126.144
CRR073319Tawny withering 224.835
CRR073320Tawny withering 317.254