Gene detail

Detail information of GWHGAAZE024859

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275425.2	0	PREDICTED: uncharacterized protein LOC100265462 isoform X1 [Vitis vinifera]
trEMBL	tr\|F6I649\|F6I649_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62445.1}
TAIR10	AT4G01270.1	6E-81	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	50798029	50803688	+
GWHAAZE00000007	mRNA	50798029	50803688	+
GWHAAZE00000007	exon	50798029	50798162	+
GWHAAZE00000007	exon	50799210	50799480	+
GWHAAZE00000007	exon	50800049	50800150	+
GWHAAZE00000007	exon	50800381	50800463	+
GWHAAZE00000007	exon	50800555	50800671	+
GWHAAZE00000007	exon	50801310	50801412	+
GWHAAZE00000007	exon	50801487	50802081	+
GWHAAZE00000007	exon	50802795	50802991	+
GWHAAZE00000007	exon	50803305	50803688	+
GWHAAZE00000007	CDS	50798029	50798162	+
GWHAAZE00000007	CDS	50799210	50799480	+
GWHAAZE00000007	CDS	50800049	50800150	+
GWHAAZE00000007	CDS	50800381	50800463	+
GWHAAZE00000007	CDS	50800555	50800671	+
GWHAAZE00000007	CDS	50801310	50801412	+
GWHAAZE00000007	CDS	50801487	50802081	+
GWHAAZE00000007	CDS	50802795	50802991	+
GWHAAZE00000007	CDS	50803305	50803424	+
GWHAAZE00000007	three_prime_UTR	50803425	50803688	+

Transcript Sequence
>GWHTAAZE024893 ATGGTGGGAGGCAATAGTAATAGTAATAATACATTTGCGAAGACCATATGTTCAATCTGCTACGAAGATCTCAAGCCTACTATCGAAGACCTTCAATCTATCTCCATTTGCGGTCACGTCTTTCACGAACTCTGCATTCAACAATGGTTCGAGTATTGTGCGAATGGGAAGAGAAAGAATTGTCCTGTTTGCAAGCAGACATGCTCGGAAGGGAGTGTGAGCCGGCTTTATTTCCAGTCAGTTGGCGACTTGAACGATCAGTCTCTCTCTCAGAAACCATTGTGGCATTGTGAAGAAAATCCGGAAGAATTGCGTAGAGAAGTGAAGAGGTTAGAAAACAAGGTTTTGGGACTCATTTCAGTTCTGGAACGTCAACAAAAAGATCTTGAAGAAGTCAACGGGGAGTTGGGCATTTGCAAGGAGCAGCTGAAGAGAGAAAAATCAACAAAGACTGATGCGTTGAAACAGAAAGCAACCATTCAGCAGTTACTTCAGATGAGAGCTGGAGAACTTGATAGATCAACCTCAGAGTGTGCGAGGCTACAGGAGAGGAACATGGCCTTGGCCAAAGAACTTGCTGCGCTCAAGTTGGTATCCGATATAAACTTGGAGGAAGATGAGATTTTGAAGCTTGCTTCTTTAGGTAAGGATGGAAACAACAAGGAGACAATAGATGTTTTAAGGAAGTCCTTAGTTATCCGGAACAAGAGTTACAAAGAATTGATGGCCAAGTGCAATTCTCTTGGAAGAGGAGAAGCCCGCTCTCTTGGTAAACTCGAGAAGGCTGGAGAGAAGATAAAAAAACTGAAGACTAGGGTACAAGAACTGGAGATGGCTGTTGAAGCAAAAGAAAATGAAATTTTGAGAACTTTGAAATGTTCCAAGAAAAATCTTCATAAGGGGGATTGCAATCTAAACTCTTCATCTATCAATAAATCATCACTCAGAGATCAAATGAAGGAACCTGCAGTACCAGTGACAAATTTAGACGAAACCGAAAATGTTTCCAAGGGCTCGTTCTGTACTTGGAAAACAGAGAATTTGAAACGCTCCATGGATAAGGGTATAAAGAGTAGTAAAGATGAAGTTAGTGCTTTAAAAGATGACTGTGCATCAGCTGTTCCTTTATCAATTCACAAGCTCTCGAATCTTTGCTCACAACCTCAAGCCAATGAGGCTGCAACCATATTACCAGCGGATTTTGACAAAAAAATTAATGCTCAAGTGGATGAACCAAATAAGAAGGATCAGGTGCTAGGCTCAAGGAGTGTTAATAAGGGAGAGGCGGTAATTAATTCCGATGGTAAGGATGAAGACATGATGTTGCTTGATGAGACTATGCAAGATCGGCCCTCACTTAATATTAGAAAAGAGACTTCATTGCCATTTTCAGTTGCTCAACCAGGAGATCGCTGTTTTTCGGGTGGGTTGCTAGGTCCTGATGGAACTAACCGGCACTTGGGGAAATGGTGCAAGCGGGCTAACAAGAAGGGACCGGCAGCATTATCTACAGGTGGAAGTACTGGCGATTTAATTGCTGTTGGAGCTGATGGTAGAGGTGGCAGAATCAAAGTTTTGCGATCTCTAAATCATCCATCATTGCAGGATGGTAAGGAAACATTAACAACGGCAAAGAGATGCAAATATGGAGCAAAAACAAGTAATTCGCCGTCTCAAGGATACTTGCAACTAGAGCACTTCTTTGGAAGAGCAGGCCAATGACAAAATGTTCAAAGGTGCGTGCTCTTTTTATGCGTGCGCCCAGCTCATCACTATGAGTTAGAAAATGAGCAAAACCATTTGCTTCGTGTTTCGAACAACAAATGCCAAAAACTGAAATGAGAACAAATTTTCTTGGTGCAATTTTTTCACAGGATGGGGGAGGCATAGAGTTAATTTAATCCCTGTGTTACCTTTTATAGGTTGAACTTGGAAAGAGTTCCATTATATAGCTTGCCTCTATAGTGTGATCCAAGGAAGATTTTG

Network for GWHGAAZE024859

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	16	65	5.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.089
	SRR3591706	second leaf	0.985
	SRR3591707	mature leaf	1.096
	SRR3591708	Shoot apex	11.103
	SRR3591709	Stem	2.159
	SRR3591710	White floral bud	1.039
	SRR3591711	White flower	0.321
	SRR3591712	Green floral bud	0.810
	SRR3591713	Yellow flower	0.326
SRP173429	SRR8316895	Juvenile bud stage	2.273
	SRR8316896	Juvenile bud stage	2.551
	SRR8316897	Juvenile bud stage	1.071
	SRR8316894	Third green stage	1.053
	SRR8316900	Third green stage	1.596
	SRR8316901	Third green stage	1.305
	SRR8316898	Complete white stage	0.169
	SRR8316899	Complete white stage	0.869
	SRR8316903	Complete white stage	0.339
	SRR8316902	Silver flowering stage	0.162
	SRR8316904	Silver flowering stage	0.148
	SRR8316905	Silver flowering stage	0.115
	SRR8316906	Gold flowering stage	0.263
	SRR8316907	Gold flowering stage	0.027
	SRR8316908	Gold flowering stage	0.241
SRP132670	SRR6706286	Control	0.854
	SRR6706287	Light intensity 50%	1.023
	SRR6706288	Light intensity 20%	1.062
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.332
	CNS0095593	Slightly white alabastrum(diploid) 2	1.942
	CNS0095594	Slightly white alabastrum(diploid) 3	1.917
	CNS0095595	Whole white alabastrum(diploid) 2	1.242
	CNS0095596	Whole white alabastrum(diploid) 3	1.581
	CNS0095597	Whole white alabastrum(diploid) 4	1.024
	CNS0095598	Silvery flower (diploied) 1	0.650
	CNS0095599	Silvery flower (diploied) 2	0.576
	CNS0095600	Silvery flower (diploied) 3	0.446
	CNS0095601	Golden flower (diploid) 1	0.661
	CNS0095602	Golden flower (diploid) 2	0.418
	CNS0095603	Golden flower (diploid) 3	0.490
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.041
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.417
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.142
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.577
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.828
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.169
	CNS0095610	Silvery flower (tetraploid) 1	0.518
	CNS0095611	Silvery flower (tetraploid) 2	0.248
	CNS0095612	Silvery flower (tetraploid) 3	0.422
	CNS0095613	Golden flower (tetraploid) 1	0.070
	CNS0095614	Golden flower (tetraploid) 2	0.339
	CNS0095615	Golden flower (tetraploid) 3	0.085
CRA001975	CRR073297	Stem 1	2.564
	CRR073298	Stem 2	2.906
	CRR073299	Stem 3	2.029
	CRR073300	Leaf 1	1.516
	CRR073301	Leaf 2	1.224
	CRR073302	Leaf 3	0.926
	CRR073303	Juvenile bud 1	0.808
	CRR073304	Juvenile bud 2	0.112
	CRR073305	Juvenile bud 3	0.256
	CRR073306	Third green 1	0.036
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.025
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.071
	CRR073311	Second white 3	0.002
	CRR073312	Silver flowering 1	0.108
	CRR073313	Silver flowering 2	0.227
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.519
	CRR073316	Gold flowering 2	0.315
	CRR073317	Gold flowering 3	0.033
	CRR073318	Tawny withering 1	1.763
	CRR073319	Tawny withering 2	1.572
	CRR073320	Tawny withering 3	1.783