Detail information of GWHGAAZE024870


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007051746.11.13315E-62Zinc finger protein, putative [Theobroma cacao]
Swissprottr|Q9SUS4|RHA1A_ARATH4E-19RING-H2 zinc finger protein RHA1a
trEMBLtr|A0A061E0V2|A0A061E0V2_THECC4E-63Zinc finger protein, putative {ECO:0000313|EMBL:EOX95903.1}
TAIR10AT3G61460.11E-44brassinosteroid-responsive RING-H2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5095622450956562+
GWHAAZE00000007mRNA5095622450956562+
GWHAAZE00000007exon5095622450956562+
GWHAAZE00000007CDS5095622450956562+
Transcript Sequence

Network for GWHGAAZE024870

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_233773.70E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.088
SRR3591706second leaf6.196
SRR3591707mature leaf7.102
SRR3591708Shoot apex11.358
SRR3591709Stem97.252
SRR3591710White floral bud18.525
SRR3591711White flower65.920
SRR3591712Green floral bud15.850
SRR3591713Yellow flower151.681
SRP173429 SRR8316895Juvenile bud stage 6.237
SRR8316896Juvenile bud stage 13.376
SRR8316897Juvenile bud stage 3.463
SRR8316894Third green stage 5.994
SRR8316900Third green stage 42.865
SRR8316901Third green stage 38.861
SRR8316898Complete white stage 37.931
SRR8316899Complete white stage 79.978
SRR8316903Complete white stage 61.998
SRR8316902Silver flowering stage36.818
SRR8316904Silver flowering stage35.630
SRR8316905Silver flowering stage20.266
SRR8316906Gold flowering stage 122.682
SRR8316907Gold flowering stage 71.883
SRR8316908Gold flowering stage 112.798
SRP132670SRR6706286Control27.796
SRR6706287Light intensity 50%22.598
SRR6706288Light intensity 20%22.662
CNP0000432CNS0095592Slightly white alabastrum(diploid) 157.425
CNS0095593Slightly white alabastrum(diploid) 234.926
CNS0095594Slightly white alabastrum(diploid) 318.318
CNS0095595Whole white alabastrum(diploid) 239.367
CNS0095596Whole white alabastrum(diploid) 327.916
CNS0095597Whole white alabastrum(diploid) 442.208
CNS0095598Silvery flower (diploied) 183.537
CNS0095599Silvery flower (diploied) 265.323
CNS0095600Silvery flower (diploied) 3108.751
CNS0095601Golden flower (diploid) 1101.567
CNS0095602Golden flower (diploid) 2186.882
CNS0095603Golden flower (diploid) 3167.512
CNS0095604Slightly white alabastrum(tetraploid) 122.613
CNS0095605Slightly white alabastrum(tetraploid) 218.319
CNS0095606Slightly white alabastrum(tetraploid) 338.340
CNS0095607Whole white alabastrum(tetraploid) 129.722
CNS0095608Whole white alabastrum(tetraploid) 228.870
CNS0095609Whole white alabastrum(tetraploid) 327.926
CNS0095610Silvery flower (tetraploid) 1181.868
CNS0095611Silvery flower (tetraploid) 2108.746
CNS0095612Silvery flower (tetraploid) 330.267
CNS0095613Golden flower (tetraploid) 1189.366
CNS0095614Golden flower (tetraploid) 2181.779
CNS0095615Golden flower (tetraploid) 395.663
CRA001975CRR073297Stem 127.631
CRR073298Stem 234.701
CRR073299Stem 333.181
CRR073300Leaf 188.224
CRR073301Leaf 299.456
CRR073302Leaf 381.482
CRR073303Juvenile bud 1160.695
CRR073304Juvenile bud 2149.324
CRR073305Juvenile bud 3143.442
CRR073306Third green 140.206
CRR073307Third green 240.784
CRR073308Third green 332.882
CRR073309Second white 125.617
CRR073310Second white 218.556
CRR073311Second white 38.972
CRR073312Silver flowering 126.858
CRR073313Silver flowering 226.948
CRR073314Silver flowering 331.806
CRR073315Gold flowering 112.296
CRR073316Gold flowering 25.599
CRR073317Gold flowering 37.277
CRR073318Tawny withering 146.005
CRR073319Tawny withering 241.194
CRR073320Tawny withering 337.458