Detail information of GWHGAAZE024875


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002276245.20PREDICTED: ATP-dependent helicase BRM [Vitis vinifera]
COGYP_003955642.18E-67snf2/helicase domain-containing protein
Swissprottr|Q6EVK6|BRM_ARATH0ATP-dependent helicase BRM
trEMBLtr|F6I645|F6I645_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB62441.1}
TAIR10AT2G46020.20transcription regulatory protein SNF2, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5102085751035264-
GWHAAZE00000007mRNA5102085751035264-
GWHAAZE00000007exon5102085751021480-
GWHAAZE00000007exon5102252651022780-
GWHAAZE00000007exon5102378051024304-
GWHAAZE00000007exon5102510251026697-
GWHAAZE00000007exon5102730051027542-
GWHAAZE00000007exon5102809751028300-
GWHAAZE00000007exon5102839251028475-
GWHAAZE00000007exon5102891251029004-
GWHAAZE00000007exon5102916651029252-
GWHAAZE00000007exon5102935951029446-
GWHAAZE00000007exon5102972351029835-
GWHAAZE00000007exon5102997051031307-
GWHAAZE00000007exon5103240851033733-
GWHAAZE00000007exon5103516051035264-
GWHAAZE00000007CDS5103516051035264-
GWHAAZE00000007CDS5103240851033733-
GWHAAZE00000007CDS5102997051031307-
GWHAAZE00000007CDS5102972351029835-
GWHAAZE00000007CDS5102935951029446-
GWHAAZE00000007CDS5102916651029252-
GWHAAZE00000007CDS5102891251029004-
GWHAAZE00000007CDS5102839251028475-
GWHAAZE00000007CDS5102809751028300-
GWHAAZE00000007CDS5102730051027542-
GWHAAZE00000007CDS5102510251026697-
GWHAAZE00000007CDS5102378051024304-
GWHAAZE00000007CDS5102252651022780-
GWHAAZE00000007CDS5102085751021480-
Transcript Sequence

Network for GWHGAAZE024875

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08880.12QLQ4574916.10E-09
PF00176.24SNF2_N99712936.80E-66
PF00271.32Helicase_C131514261.10E-16
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0005634cellular_componentnucleus
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.349
SRR3591706second leaf19.030
SRR3591707mature leaf18.470
SRR3591708Shoot apex23.437
SRR3591709Stem26.676
SRR3591710White floral bud35.962
SRR3591711White flower35.952
SRR3591712Green floral bud28.621
SRR3591713Yellow flower28.107
SRP173429 SRR8316895Juvenile bud stage 14.813
SRR8316896Juvenile bud stage 19.400
SRR8316897Juvenile bud stage 8.754
SRR8316894Third green stage 10.386
SRR8316900Third green stage 22.657
SRR8316901Third green stage 21.409
SRR8316898Complete white stage 8.214
SRR8316899Complete white stage 27.520
SRR8316903Complete white stage 24.988
SRR8316902Silver flowering stage11.914
SRR8316904Silver flowering stage21.750
SRR8316905Silver flowering stage9.166
SRR8316906Gold flowering stage 29.156
SRR8316907Gold flowering stage 25.811
SRR8316908Gold flowering stage 29.663
SRP132670SRR6706286Control22.383
SRR6706287Light intensity 50%24.917
SRR6706288Light intensity 20%24.941
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.991
CNS0095593Slightly white alabastrum(diploid) 211.922
CNS0095594Slightly white alabastrum(diploid) 311.152
CNS0095595Whole white alabastrum(diploid) 211.957
CNS0095596Whole white alabastrum(diploid) 39.199
CNS0095597Whole white alabastrum(diploid) 412.573
CNS0095598Silvery flower (diploied) 118.080
CNS0095599Silvery flower (diploied) 216.377
CNS0095600Silvery flower (diploied) 338.686
CNS0095601Golden flower (diploid) 116.441
CNS0095602Golden flower (diploid) 240.840
CNS0095603Golden flower (diploid) 337.995
CNS0095604Slightly white alabastrum(tetraploid) 115.416
CNS0095605Slightly white alabastrum(tetraploid) 212.135
CNS0095606Slightly white alabastrum(tetraploid) 340.786
CNS0095607Whole white alabastrum(tetraploid) 112.306
CNS0095608Whole white alabastrum(tetraploid) 210.648
CNS0095609Whole white alabastrum(tetraploid) 326.281
CNS0095610Silvery flower (tetraploid) 138.209
CNS0095611Silvery flower (tetraploid) 236.676
CNS0095612Silvery flower (tetraploid) 339.228
CNS0095613Golden flower (tetraploid) 116.608
CNS0095614Golden flower (tetraploid) 230.425
CNS0095615Golden flower (tetraploid) 342.531
CRA001975CRR073297Stem 129.672
CRR073298Stem 228.984
CRR073299Stem 324.384
CRR073300Leaf 132.000
CRR073301Leaf 225.564
CRR073302Leaf 317.413
CRR073303Juvenile bud 122.071
CRR073304Juvenile bud 218.189
CRR073305Juvenile bud 336.521
CRR073306Third green 118.662
CRR073307Third green 212.429
CRR073308Third green 321.663
CRR073309Second white 114.218
CRR073310Second white 223.469
CRR073311Second white 328.547
CRR073312Silver flowering 121.808
CRR073313Silver flowering 225.216
CRR073314Silver flowering 317.815
CRR073315Gold flowering 16.103
CRR073316Gold flowering 210.972
CRR073317Gold flowering 36.812
CRR073318Tawny withering 118.101
CRR073319Tawny withering 218.938
CRR073320Tawny withering 315.919