Detail information of GWHGAAZE024890


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001267954.10myc anthocyanin regulatory protein [Vitis vinifera]
Swissprottr|Q9FN69|GL3_ARATH2E-128Transcription factor GLABRA 3
trEMBLtr|A2TEF4|A2TEF4_VITVI0Myc anthocyanin regulatory protein {ECO:0000313|EMBL:ABM92332.3}
TAIR10AT5G41315.16E-110basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5132003151325224-
GWHAAZE00000007mRNA5132003151325224-
GWHAAZE00000007exon5132510051325224-
GWHAAZE00000007exon5132414851324405-
GWHAAZE00000007exon5132315351323249-
GWHAAZE00000007exon5132250051322556-
GWHAAZE00000007exon5132159051322375-
GWHAAZE00000007exon5132073451321159-
GWHAAZE00000007exon5132003151320317-
GWHAAZE00000007CDS5132510051325224-
GWHAAZE00000007CDS5132414851324405-
GWHAAZE00000007CDS5132315351323249-
GWHAAZE00000007CDS5132250051322556-
GWHAAZE00000007CDS5132159051322375-
GWHAAZE00000007CDS5132073451321159-
GWHAAZE00000007CDS5132024651320317-
GWHAAZE00000007three_prime_UTR5132003151320245-
Transcript Sequence

Network for GWHGAAZE024890

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14215.7bHLH-MYC_N151923.70E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.222
SRR3591706second leaf41.610
SRR3591707mature leaf61.558
SRR3591708Shoot apex47.923
SRR3591709Stem39.251
SRR3591710White floral bud17.264
SRR3591711White flower21.115
SRR3591712Green floral bud18.667
SRR3591713Yellow flower12.997
SRP173429 SRR8316895Juvenile bud stage 19.297
SRR8316896Juvenile bud stage 22.922
SRR8316897Juvenile bud stage 10.992
SRR8316894Third green stage 10.419
SRR8316900Third green stage 19.721
SRR8316901Third green stage 17.839
SRR8316898Complete white stage 4.781
SRR8316899Complete white stage 28.383
SRR8316903Complete white stage 12.008
SRR8316902Silver flowering stage5.635
SRR8316904Silver flowering stage8.060
SRR8316905Silver flowering stage3.751
SRR8316906Gold flowering stage 12.125
SRR8316907Gold flowering stage 12.327
SRR8316908Gold flowering stage 15.826
SRP132670SRR6706286Control10.446
SRR6706287Light intensity 50%11.048
SRR6706288Light intensity 20%10.540
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.663
CNS0095593Slightly white alabastrum(diploid) 212.675
CNS0095594Slightly white alabastrum(diploid) 311.255
CNS0095595Whole white alabastrum(diploid) 210.692
CNS0095596Whole white alabastrum(diploid) 36.132
CNS0095597Whole white alabastrum(diploid) 48.033
CNS0095598Silvery flower (diploied) 125.789
CNS0095599Silvery flower (diploied) 218.219
CNS0095600Silvery flower (diploied) 318.718
CNS0095601Golden flower (diploid) 121.047
CNS0095602Golden flower (diploid) 226.462
CNS0095603Golden flower (diploid) 324.330
CNS0095604Slightly white alabastrum(tetraploid) 111.456
CNS0095605Slightly white alabastrum(tetraploid) 29.667
CNS0095606Slightly white alabastrum(tetraploid) 324.108
CNS0095607Whole white alabastrum(tetraploid) 18.149
CNS0095608Whole white alabastrum(tetraploid) 23.763
CNS0095609Whole white alabastrum(tetraploid) 310.843
CNS0095610Silvery flower (tetraploid) 115.118
CNS0095611Silvery flower (tetraploid) 216.958
CNS0095612Silvery flower (tetraploid) 315.834
CNS0095613Golden flower (tetraploid) 18.714
CNS0095614Golden flower (tetraploid) 212.538
CNS0095615Golden flower (tetraploid) 35.457
CRA001975CRR073297Stem 118.806
CRR073298Stem 217.674
CRR073299Stem 317.347
CRR073300Leaf 115.009
CRR073301Leaf 212.655
CRR073302Leaf 312.456
CRR073303Juvenile bud 18.364
CRR073304Juvenile bud 26.130
CRR073305Juvenile bud 38.808
CRR073306Third green 11.941
CRR073307Third green 22.720
CRR073308Third green 33.277
CRR073309Second white 13.732
CRR073310Second white 24.822
CRR073311Second white 33.156
CRR073312Silver flowering 11.703
CRR073313Silver flowering 21.511
CRR073314Silver flowering 32.467
CRR073315Gold flowering 111.865
CRR073316Gold flowering 222.192
CRR073317Gold flowering 312.698
CRR073318Tawny withering 112.095
CRR073319Tawny withering 29.397
CRR073320Tawny withering 312.008