Gene detail

Detail information of GWHGAAZE024893

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	Q04903.1FNTB_PEA	1.0851E-156	RecName: Full=Protein farnesyltransferase subunit beta; Short=FTase-beta; AltName: Full=CAAX farnesyltransferase subunit beta; AltName: Full=Ras proteins prenyltransferase subunit beta [Pisum sativum]
COG	YP_004903591.1	0.0000004	hypothetical protein KSE_18100
Swissprot	tr\|Q04903\|FNTB_PEA	5E-159	Protein farnesyltransferase subunit beta
trEMBL	tr\|A0A072U531\|A0A072U531_MEDTR	2E-156	Farnesyltranstransferase subunit beta {ECO:0000313\|EMBL:KEH24844.1}
TAIR10	AT5G40280.1	6E-92	Prenyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51387079	51394477	-
GWHAAZE00000007	mRNA	51387079	51394477	-
GWHAAZE00000007	exon	51387079	51387312	-
GWHAAZE00000007	exon	51388511	51388674	-
GWHAAZE00000007	exon	51389012	51389195	-
GWHAAZE00000007	exon	51389286	51389372	-
GWHAAZE00000007	exon	51390038	51390110	-
GWHAAZE00000007	exon	51390289	51390345	-
GWHAAZE00000007	exon	51391035	51391099	-
GWHAAZE00000007	exon	51392758	51392809	-
GWHAAZE00000007	exon	51393946	51393999	-
GWHAAZE00000007	exon	51394107	51394189	-
GWHAAZE00000007	exon	51394412	51394477	-
GWHAAZE00000007	CDS	51394412	51394477	-
GWHAAZE00000007	CDS	51394107	51394189	-
GWHAAZE00000007	CDS	51393946	51393999	-
GWHAAZE00000007	CDS	51392758	51392809	-
GWHAAZE00000007	CDS	51391035	51391099	-
GWHAAZE00000007	CDS	51390289	51390345	-
GWHAAZE00000007	CDS	51390038	51390110	-
GWHAAZE00000007	CDS	51389286	51389372	-
GWHAAZE00000007	CDS	51389012	51389195	-
GWHAAZE00000007	CDS	51388511	51388674	-
GWHAAZE00000007	CDS	51387079	51387312	-

Transcript Sequence
>GWHTAAZE024927 ATGTTAGACTGTGACTTTGTCGTCTCGCAGGATCCAGATGGTGGATATGGAGGTGGACCTGGACAGATGCCTCATCTTGCTACAACTTATGCCGCAGTCAATTCACTTATAACGTTGGGTGGTCATAGATCTTTTTCATCAATCAATAGAGCTAAGATATATTCTTTTTTGCTGCGAATGAAGGACACTAGTGGGGGCTTCAGGATGCATGATGGTGGAGAAATTGATGTTCGTGCTTGCTACACTGCAATATCTGTTGCAAGTGTCCTGAACATTTTAGATGGTGAGCTGGTTCAGAATGTTGGAAATTACATTCTAAGCTGCCAGACCTATGAAGGTGGCATAGCTGGCGAACCAGGTTCTGAAGCTCATGGTGGGTACACCTTTTGTGGGTTGGCTACAATGGTTTTGATCAATGAGGTTAATTGTTTGGACTTGGCTAATTTAACTGACTGGGTGGTATTTAGACAAGGAATAGAAGGTGGATTTCAAGGGAGAACAAATAAATTGGTTGATGGTTGCTACTCATTTTGGCAGGGAGCAGTGCTAGCTTTGATACAAATGCTATGCTCAGTTGGTGACGAGCAGTTGGGTGCTGAAGAAGAGGACTGCAGTACAGATAGCACTGAAAGTTGTGCAGCATCTGAGTTATCCGAAGAGGATCAACATTCGGAAGAGATTTCGTTTAATGTTGACGAAGCCTCCCATAGTAGGGATGAAGAACTTCTTAGAGCAAAATTTGACCAACAAATATCAAATGTTCCCGCACCTCGAACTGCAGGAAACGCTCCTGATTGTGGTTTGGAGTTTGTCAGAAGGCATACAACAAATCAATCTCTTTTCCATTGCGTGGCTTTGCAGCAATATATACTTCTATGTTCTCAGATGGAGGGAGGGTTCAGAGACAAACCGGGGAAGCAAAGAGACCATTATCACAGTTGCTACTGTCTTAGTGGCCTATCCTCATCTCAGTATAGCTGGTCCAAAGGTGCCGATTCTCCGCCTTATCCGAAGGCCGTCTTGGGTCCTTATTCCAATCTGTTGGAACCTATTCACCCACTCTACAATGTTGCCTTTGAGCAATACAGTGAGGCACGCCTATTCTTCTCTAGGTCCTAA

Network for GWHGAAZE024893

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00432.22	Prenyltrans	10	40	2.40E-06
PF00432.22	Prenyltrans	48	90	9.30E-08
PF00432.22	Prenyltrans	99	138	2.50E-10
PF00432.22	Prenyltrans	147	186	1.40E-08
PF00432.22	Prenyltrans	286	321	2.90E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05954	FNTB	Biosynthesis of secondary metabolites	map01110
K05954	FNTB	Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0018343	biological_process	protein farnesylation
GO:0005965	cellular_component	protein farnesyltransferase complex
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.793
	SRR3591706	second leaf	8.145
	SRR3591707	mature leaf	12.548
	SRR3591708	Shoot apex	17.407
	SRR3591709	Stem	20.342
	SRR3591710	White floral bud	16.578
	SRR3591711	White flower	21.257
	SRR3591712	Green floral bud	16.100
	SRR3591713	Yellow flower	22.001
SRP173429	SRR8316895	Juvenile bud stage	8.850
	SRR8316896	Juvenile bud stage	16.232
	SRR8316897	Juvenile bud stage	9.949
	SRR8316894	Third green stage	5.737
	SRR8316900	Third green stage	17.771
	SRR8316901	Third green stage	21.294
	SRR8316898	Complete white stage	5.528
	SRR8316899	Complete white stage	26.544
	SRR8316903	Complete white stage	10.710
	SRR8316902	Silver flowering stage	6.528
	SRR8316904	Silver flowering stage	7.525
	SRR8316905	Silver flowering stage	4.424
	SRR8316906	Gold flowering stage	14.829
	SRR8316907	Gold flowering stage	14.469
	SRR8316908	Gold flowering stage	11.255
SRP132670	SRR6706286	Control	24.081
	SRR6706287	Light intensity 50%	23.387
	SRR6706288	Light intensity 20%	23.352
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.395
	CNS0095593	Slightly white alabastrum(diploid) 2	13.912
	CNS0095594	Slightly white alabastrum(diploid) 3	13.744
	CNS0095595	Whole white alabastrum(diploid) 2	14.140
	CNS0095596	Whole white alabastrum(diploid) 3	13.344
	CNS0095597	Whole white alabastrum(diploid) 4	13.092
	CNS0095598	Silvery flower (diploied) 1	21.342
	CNS0095599	Silvery flower (diploied) 2	20.316
	CNS0095600	Silvery flower (diploied) 3	19.814
	CNS0095601	Golden flower (diploid) 1	22.961
	CNS0095602	Golden flower (diploid) 2	24.414
	CNS0095603	Golden flower (diploid) 3	20.692
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.904
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.135
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.727
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.175
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.938
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.402
	CNS0095610	Silvery flower (tetraploid) 1	15.453
	CNS0095611	Silvery flower (tetraploid) 2	15.795
	CNS0095612	Silvery flower (tetraploid) 3	11.073
	CNS0095613	Golden flower (tetraploid) 1	10.339
	CNS0095614	Golden flower (tetraploid) 2	14.364
	CNS0095615	Golden flower (tetraploid) 3	9.407
CRA001975	CRR073297	Stem 1	19.052
	CRR073298	Stem 2	15.990
	CRR073299	Stem 3	13.153
	CRR073300	Leaf 1	22.967
	CRR073301	Leaf 2	20.481
	CRR073302	Leaf 3	17.385
	CRR073303	Juvenile bud 1	16.603
	CRR073304	Juvenile bud 2	13.553
	CRR073305	Juvenile bud 3	14.696
	CRR073306	Third green 1	4.300
	CRR073307	Third green 2	4.455
	CRR073308	Third green 3	3.649
	CRR073309	Second white 1	5.586
	CRR073310	Second white 2	5.951
	CRR073311	Second white 3	4.002
	CRR073312	Silver flowering 1	3.520
	CRR073313	Silver flowering 2	2.981
	CRR073314	Silver flowering 3	4.923
	CRR073315	Gold flowering 1	9.575
	CRR073316	Gold flowering 2	11.609
	CRR073317	Gold flowering 3	7.894
	CRR073318	Tawny withering 1	12.847
	CRR073319	Tawny withering 2	14.605
	CRR073320	Tawny withering 3	14.631