Gene detail

Detail information of GWHGAAZE024896

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093142.1	2.2929E-104	PREDICTED: acyl-coenzyme A thioesterase 8-like [Sesamum indicum]
COG	YP_005887040.1	6E-36	acyl-CoA thioesterase II
trEMBL	tr\|D7UC96\|D7UC96_VITVI	2E-103	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40361.3}
TAIR10	AT1G01710.1	2E-73	Acyl-CoA thioesterase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51408806	51411423	+
GWHAAZE00000007	mRNA	51408806	51411423	+
GWHAAZE00000007	exon	51408806	51408889	+
GWHAAZE00000007	exon	51408989	51409044	+
GWHAAZE00000007	exon	51409987	51410091	+
GWHAAZE00000007	exon	51410227	51410283	+
GWHAAZE00000007	exon	51410547	51410648	+
GWHAAZE00000007	exon	51410885	51411083	+
GWHAAZE00000007	exon	51411337	51411423	+
GWHAAZE00000007	CDS	51408806	51408889	+
GWHAAZE00000007	CDS	51408989	51409044	+
GWHAAZE00000007	CDS	51409987	51410091	+
GWHAAZE00000007	CDS	51410227	51410283	+
GWHAAZE00000007	CDS	51410547	51410648	+
GWHAAZE00000007	CDS	51410885	51411083	+
GWHAAZE00000007	CDS	51411337	51411423	+

Transcript Sequence
>GWHTAAZE024930 ATGGATGATTCAACTTTACAGAAAGAAGAAAAGGGCTTTGATCACCAAGAAGCAATAATGCCATTAGCGCCTGATCCTGAAGTGCTTTTGTCAATGGAAGAGTTGCGAGAGAGGCGCCTAACTAATCCTCGTCTTCCTAGGACTTACCGGAACAAAGTTGCTACTAGAGAGTTTGTGCCATGGCCCATAGAGATTAGGTTTTGCGAGTATAACAATTCCACCAATCAGACCAAATCTCCTCCAAGTTTGATGTACTGGTTTAGAGCAAAGGGAAAACTTTCTGACGACCAGAACTTGCATAGGTGTATAGCAGCATACGCTTCAGATCTAATATTTTTTCAAGTAAGTTTGAATCCTCACCGTGAAAAGGGTTTGAAGTCCGCTTCTGTTAGTCTGGATCACTCAATGTGGTTTCACAGGCCTATCAGAGCAGATGACTGGTTGTTGTTTGTGGTAAGCACGAAAAAGAAATTCATTTCTTCTTATTGTTCATCAAGTGTTCCTCCTCATTCCTCATCATTCACGGTTCTACAGATAACAAGCCCTTCTGCTTTTAGTGCACGAGGATATGTTTCAGGCCAAATGTTCAATAGGAAAGGAGAGCTTGTAGTGTTGCTAACTCAAGAAGGCTTATTAAGAAAGGCAAGAACACCGGACTCTACTGCTGCTGTATCAAATTCGAAGCTGTAA

Network for GWHGAAZE024896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02551.16	Acyl_CoA_thio	59	155	1.10E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01068	ACOT1_2_4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Biosynthesis of unsaturated fatty acids	map01040
		Ovarian steroidogenesis	map04913

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.539
	SRR3591706	second leaf	15.797
	SRR3591707	mature leaf	10.292
	SRR3591708	Shoot apex	11.467
	SRR3591709	Stem	13.556
	SRR3591710	White floral bud	20.734
	SRR3591711	White flower	18.437
	SRR3591712	Green floral bud	7.166
	SRR3591713	Yellow flower	4.300
SRP173429	SRR8316895	Juvenile bud stage	6.542
	SRR8316896	Juvenile bud stage	5.133
	SRR8316897	Juvenile bud stage	4.550
	SRR8316894	Third green stage	3.378
	SRR8316900	Third green stage	6.823
	SRR8316901	Third green stage	7.345
	SRR8316898	Complete white stage	1.096
	SRR8316899	Complete white stage	9.007
	SRR8316903	Complete white stage	1.840
	SRR8316902	Silver flowering stage	0.170
	SRR8316904	Silver flowering stage	0.379
	SRR8316905	Silver flowering stage	0.111
	SRR8316906	Gold flowering stage	0.502
	SRR8316907	Gold flowering stage	0.350
	SRR8316908	Gold flowering stage	1.204
SRP132670	SRR6706286	Control	2.137
	SRR6706287	Light intensity 50%	3.147
	SRR6706288	Light intensity 20%	3.838
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.837
	CNS0095593	Slightly white alabastrum(diploid) 2	7.846
	CNS0095594	Slightly white alabastrum(diploid) 3	4.198
	CNS0095595	Whole white alabastrum(diploid) 2	7.415
	CNS0095596	Whole white alabastrum(diploid) 3	6.099
	CNS0095597	Whole white alabastrum(diploid) 4	4.386
	CNS0095598	Silvery flower (diploied) 1	8.116
	CNS0095599	Silvery flower (diploied) 2	8.351
	CNS0095600	Silvery flower (diploied) 3	1.214
	CNS0095601	Golden flower (diploid) 1	6.956
	CNS0095602	Golden flower (diploid) 2	2.784
	CNS0095603	Golden flower (diploid) 3	2.643
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.518
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.749
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.305
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.697
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.519
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.173
	CNS0095610	Silvery flower (tetraploid) 1	1.884
	CNS0095611	Silvery flower (tetraploid) 2	1.837
	CNS0095612	Silvery flower (tetraploid) 3	0.572
	CNS0095613	Golden flower (tetraploid) 1	0.622
	CNS0095614	Golden flower (tetraploid) 2	1.009
	CNS0095615	Golden flower (tetraploid) 3	0.099
CRA001975	CRR073297	Stem 1	5.668
	CRR073298	Stem 2	3.860
	CRR073299	Stem 3	1.544
	CRR073300	Leaf 1	4.822
	CRR073301	Leaf 2	5.819
	CRR073302	Leaf 3	3.896
	CRR073303	Juvenile bud 1	2.707
	CRR073304	Juvenile bud 2	1.827
	CRR073305	Juvenile bud 3	3.443
	CRR073306	Third green 1	0.286
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.565
	CRR073309	Second white 1	0.689
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.491
	CRR073316	Gold flowering 2	1.242
	CRR073317	Gold flowering 3	0.956
	CRR073318	Tawny withering 1	1.668
	CRR073319	Tawny withering 2	2.248
	CRR073320	Tawny withering 3	2.848