Gene detail

Detail information of GWHGAAZE024900

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002262991.2	0	PREDICTED: protein pleiotropic regulatory locus 1 [Vitis vinifera]
COG	YP_001865069.1	3E-45	hypothetical protein Npun_F1419
Swissprot	tr\|Q42384\|PRL1_ARATH	0	Protein pleiotropic regulatory locus 1
trEMBL	tr\|D7SYE1\|D7SYE1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22998.3}
TAIR10	AT4G15900.1	0	pleiotropic regulatory locus 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51499715	51507972	+
GWHAAZE00000007	mRNA	51499715	51507972	+
GWHAAZE00000007	exon	51499715	51499854	+
GWHAAZE00000007	exon	51500041	51500065	+
GWHAAZE00000007	exon	51500318	51500438	+
GWHAAZE00000007	exon	51501110	51501191	+
GWHAAZE00000007	exon	51501494	51501556	+
GWHAAZE00000007	exon	51503205	51503289	+
GWHAAZE00000007	exon	51504013	51504105	+
GWHAAZE00000007	exon	51504569	51504632	+
GWHAAZE00000007	exon	51504770	51504855	+
GWHAAZE00000007	exon	51504946	51505047	+
GWHAAZE00000007	exon	51505489	51505572	+
GWHAAZE00000007	exon	51505974	51506034	+
GWHAAZE00000007	exon	51506122	51506188	+
GWHAAZE00000007	exon	51506327	51506404	+
GWHAAZE00000007	exon	51506810	51506874	+
GWHAAZE00000007	exon	51507074	51507151	+
GWHAAZE00000007	exon	51507800	51507972	+
GWHAAZE00000007	CDS	51499715	51499854	+
GWHAAZE00000007	CDS	51500041	51500065	+
GWHAAZE00000007	CDS	51500318	51500438	+
GWHAAZE00000007	CDS	51501110	51501191	+
GWHAAZE00000007	CDS	51501494	51501556	+
GWHAAZE00000007	CDS	51503205	51503289	+
GWHAAZE00000007	CDS	51504013	51504105	+
GWHAAZE00000007	CDS	51504569	51504632	+
GWHAAZE00000007	CDS	51504770	51504855	+
GWHAAZE00000007	CDS	51504946	51505047	+
GWHAAZE00000007	CDS	51505489	51505572	+
GWHAAZE00000007	CDS	51505974	51506034	+
GWHAAZE00000007	CDS	51506122	51506188	+
GWHAAZE00000007	CDS	51506327	51506404	+
GWHAAZE00000007	CDS	51506810	51506874	+
GWHAAZE00000007	CDS	51507074	51507151	+
GWHAAZE00000007	CDS	51507800	51507972	+

Transcript Sequence
>GWHTAAZE024934 ATGCCAGGTCCAACAATGGAGGCCGAAGAACTCCCAGTGGAGCCACAATCACTTAAGAAGCTGAGTTTCAAATCCCTCAAACGATCTCTCGATCTCTTCTCTCCCCTCCACGCTCAATTCCCTCCTCCCGATCCCCACAGCAAGAACATACGAATGAGCCATAAGTTAAATGTTGAATATGGAGGGATCAAAAGCACTACAACTCCAGTTTCTGCTCATGCAAATTCGGGTGCACCAACTCAAACCCAGCAAGCTTCTGCACCGTCAAATTCCCTTGCTCTTCCAGGTCCTGAAAGTTCTAGAGACCGGCAGAAGGGACCGGCTCAAACTGATTTAGTTGTTGTTCCATCCATGCAACCAAAGGGCCCAAGTGATGGTAGTTTTGCTGGCAAAAGCACTACAATTATTCCTGCGCATGGGTCATCTGACAGGAATCTCTCAACTTCAGCCCTAATGGAAAGAATCCCAAGTAGGTGGCCACGTCCTGTATGGCATCCTCCATGGAAGAACTACAGGGTTATTAGTGGTCATCTCGGATGGGTGAGATCTATTGCATTTGATCCAAGCAATAATTGGTTCTGTACCGGCTCTGCAGATCGTACAATCAAGATATGGGATGTAGGAACGGGAAGGCTAAAGCTTACATTGACAGGACACATTGAACAGATACGAGGCCTTGCTGTAAGCAATAAGCACACATATATGTTTTCTGCTGGAGATGACAAGCAAGTTAAATGCTGGGATCTGGAGCAGAATAAGGTCATCCGGTCCTATCATGGTCATCTAAGTGGTGTTTATTGCTTGGCACTTCATCCCACAATTGATGTTCTGCTTACTGGCGGTCGTGATTCTGTCTGTCGGGTGTGGGATATCCGTAGCAAGATGCAAATTCACGCGCTATCTGGGCATGATAACACAGTTTGTTCAGTTTTTACCAGACCAACGGATCCACAAGTTGTAACTGGTTCCCATGACACCACTATAAAGTTTTGGGACCTTAGATACGGCAAAACAATGGCAACACTTACACACCATAAGAAATCTGTGCGAGCAATGGCTCAGCATCCTACCGAGAATTGTTTTGCATCTGCCTCGGCTGACAACATAAAGAAATTCAACCTCCCCAGAGGAGAATTTTTACACAACATGCTCTCTCAACAGAAGACCATCATCAATGCAATGGCTGTCAACGAAGATGGGGTGATGGCTACTGGAGGTGATAATGGAAGTATGTGGTTCTGGGATTGGAAGAGTGGTCACAATTTCCAGCAATCCCAAACTATTGTTCAGCCTGGTTCACTGGATAGTGAAGCAGGCATTTATGCGCTCTCGTACGATGTTACTGGTACGAGGCTTGTATCTTGTGAAGCAGACAAGACTATAAAAATGTGGAAAGAGGACGAAAATGCCACTCCCGAAACTCATCCCCTCAACTTCAAGCCCCCTAAAGACATCCGCAGGTTTTAG

Network for GWHGAAZE024900

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	169	206	3.50E-10
PF00400.33	WD40	212	248	9.00E-05
PF00400.33	WD40	253	290	4.00E-06
PF00400.33	WD40	297	332	2.40E-05
PF00400.33	WD40	436	465	0.092

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K12862	PLRG1, PRL1, PRP46	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.262
	SRR3591706	second leaf	36.433
	SRR3591707	mature leaf	21.438
	SRR3591708	Shoot apex	49.177
	SRR3591709	Stem	33.242
	SRR3591710	White floral bud	34.177
	SRR3591711	White flower	44.239
	SRR3591712	Green floral bud	38.950
	SRR3591713	Yellow flower	40.889
SRP173429	SRR8316895	Juvenile bud stage	25.567
	SRR8316896	Juvenile bud stage	33.936
	SRR8316897	Juvenile bud stage	21.904
	SRR8316894	Third green stage	12.699
	SRR8316900	Third green stage	40.231
	SRR8316901	Third green stage	36.701
	SRR8316898	Complete white stage	12.056
	SRR8316899	Complete white stage	41.134
	SRR8316903	Complete white stage	20.390
	SRR8316902	Silver flowering stage	14.360
	SRR8316904	Silver flowering stage	18.764
	SRR8316905	Silver flowering stage	10.027
	SRR8316906	Gold flowering stage	29.149
	SRR8316907	Gold flowering stage	34.207
	SRR8316908	Gold flowering stage	30.248
SRP132670	SRR6706286	Control	54.606
	SRR6706287	Light intensity 50%	53.921
	SRR6706288	Light intensity 20%	55.910
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.906
	CNS0095593	Slightly white alabastrum(diploid) 2	28.601
	CNS0095594	Slightly white alabastrum(diploid) 3	22.562
	CNS0095595	Whole white alabastrum(diploid) 2	24.310
	CNS0095596	Whole white alabastrum(diploid) 3	19.956
	CNS0095597	Whole white alabastrum(diploid) 4	19.204
	CNS0095598	Silvery flower (diploied) 1	26.825
	CNS0095599	Silvery flower (diploied) 2	33.573
	CNS0095600	Silvery flower (diploied) 3	35.752
	CNS0095601	Golden flower (diploid) 1	24.043
	CNS0095602	Golden flower (diploid) 2	32.250
	CNS0095603	Golden flower (diploid) 3	30.586
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.114
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.814
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.179
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.838
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.436
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.474
	CNS0095610	Silvery flower (tetraploid) 1	36.446
	CNS0095611	Silvery flower (tetraploid) 2	41.435
	CNS0095612	Silvery flower (tetraploid) 3	32.977
	CNS0095613	Golden flower (tetraploid) 1	25.301
	CNS0095614	Golden flower (tetraploid) 2	36.904
	CNS0095615	Golden flower (tetraploid) 3	30.058
CRA001975	CRR073297	Stem 1	47.839
	CRR073298	Stem 2	41.085
	CRR073299	Stem 3	43.204
	CRR073300	Leaf 1	47.214
	CRR073301	Leaf 2	48.165
	CRR073302	Leaf 3	39.527
	CRR073303	Juvenile bud 1	43.095
	CRR073304	Juvenile bud 2	29.478
	CRR073305	Juvenile bud 3	51.813
	CRR073306	Third green 1	15.011
	CRR073307	Third green 2	12.355
	CRR073308	Third green 3	14.340
	CRR073309	Second white 1	17.185
	CRR073310	Second white 2	16.321
	CRR073311	Second white 3	24.427
	CRR073312	Silver flowering 1	22.702
	CRR073313	Silver flowering 2	22.409
	CRR073314	Silver flowering 3	12.715
	CRR073315	Gold flowering 1	22.302
	CRR073316	Gold flowering 2	36.705
	CRR073317	Gold flowering 3	27.321
	CRR073318	Tawny withering 1	33.358
	CRR073319	Tawny withering 2	30.933
	CRR073320	Tawny withering 3	34.264