Gene detail

Detail information of GWHGAAZE024910

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007051856.1	9.1722E-149	Myb domain protein 17 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q50EX6\|ODO1_PETHY	3E-58	Protein ODORANT1
trEMBL	tr\|A0A061E159\|A0A061E159_THECC	3E-149	Myb domain protein 17 isoform 1 {ECO:0000313\|EMBL:EOX96013.1}
TAIR10	AT3G61250.1	4E-67	myb domain protein 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51612514	51615561	-
GWHAAZE00000007	mRNA	51612514	51615561	-
GWHAAZE00000007	exon	51612514	51613174	-
GWHAAZE00000007	exon	51613998	51614178	-
GWHAAZE00000007	exon	51615429	51615561	-
GWHAAZE00000007	CDS	51615429	51615561	-
GWHAAZE00000007	CDS	51613998	51614178	-
GWHAAZE00000007	CDS	51612514	51613174	-

Transcript Sequence
>GWHTAAZE024944 ATGGGGAGAACTCCTTGCTGTGATAAGAAAGGATTGAAAAAAGGGCCATGGAGTAGTGAAGAAGATGAGATTCTCATTGAATACATCAAGAAGAATGGCTGTGGAAGCTGGAGGTCTCTTCCTAAGCTTGCAGGAAGAGAAATGAAAGAGAACGGTATAGATTATGGGGTTTCTGTATTTGCAGGTCTTCTTCGCTGCGGAAAGAGTTGCCGTCTTAGGTGGACAAACTATCTAAGGCCGGATATAAAACGCGGTCCCTTCACTCCTGAAGAAGAGAAGCTTGTGGTGCAATTGCATGGCATTCTTGGTAACAGGTGGGCTGCCATTGCTTCTCAGCTACCGGGACGAACCGACAATGAGATCAAGAACTTATGGAACACCCACTTAAAGAAACGTCTACAATGCATGGGGATCGACCCACAAACTCACGAACCTACCACCATCACAACCACCACCACCACTGGACCACCGCCGTCTCTTGCCACCCGCCACATGGCACAATGGGAGAGTGCTAGGCTCGAAGCCGAGGCACGCCTTTCAAGAGAATCGCTACTTTTGGCCTCGCCTACTGGAAGAACCGACACTGACTACTTCCTACGCATTTGGAACTCTGAGGTTGGAGAATCATTTCGAAAGCTCAACAAATCCGACAAAAATCCTTCTGAAAGCCCAATCTCTCACGCATCTTCCTCGAAATGTGGATCCATTTCGGGCAACATGACCGAACTGGGACCTACAGTAGCACCACCAGTCAACCAAACCGAGTACATGGAATTCAAGATTAGTGAATCGAAATCTGAATATCTAATGACCGGATCGGATTCTACTTGCTCAAACGAGTTGGAAGATTCGTCCGATTCAGCATTACAGTTGCTCTTGGATTTTCCAGTGAACAATGATATGAGCTTTTTGGAAGGGAATAGTGATGATTATTATGGTATATATCCTTCAATTTTAAACGAAAGCACTTCTTGA

Network for GWHGAAZE024910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	78	9.80E-12
PF00249.32	Myb_DNA-binding	84	129	6.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.536
	SRR3591706	second leaf	0.419
	SRR3591707	mature leaf	0.272
	SRR3591708	Shoot apex	1.986
	SRR3591709	Stem	0.412
	SRR3591710	White floral bud	1.305
	SRR3591711	White flower	1.314
	SRR3591712	Green floral bud	15.181
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.812
	SRR8316896	Juvenile bud stage	12.529
	SRR8316897	Juvenile bud stage	2.956
	SRR8316894	Third green stage	10.611
	SRR8316900	Third green stage	47.158
	SRR8316901	Third green stage	48.878
	SRR8316898	Complete white stage	1.147
	SRR8316899	Complete white stage	20.838
	SRR8316903	Complete white stage	1.685
	SRR8316902	Silver flowering stage	0.067
	SRR8316904	Silver flowering stage	0.035
	SRR8316905	Silver flowering stage	0.212
	SRR8316906	Gold flowering stage	0.124
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	39.258
	SRR6706287	Light intensity 50%	37.712
	SRR6706288	Light intensity 20%	39.452
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.916
	CNS0095593	Slightly white alabastrum(diploid) 2	6.956
	CNS0095594	Slightly white alabastrum(diploid) 3	4.892
	CNS0095595	Whole white alabastrum(diploid) 2	5.698
	CNS0095596	Whole white alabastrum(diploid) 3	6.872
	CNS0095597	Whole white alabastrum(diploid) 4	3.980
	CNS0095598	Silvery flower (diploied) 1	3.268
	CNS0095599	Silvery flower (diploied) 2	3.260
	CNS0095600	Silvery flower (diploied) 3	0.603
	CNS0095601	Golden flower (diploid) 1	3.018
	CNS0095602	Golden flower (diploid) 2	1.610
	CNS0095603	Golden flower (diploid) 3	1.114
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.627
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.761
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.873
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.491
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.039
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.075
	CNS0095610	Silvery flower (tetraploid) 1	0.212
	CNS0095611	Silvery flower (tetraploid) 2	1.134
	CNS0095612	Silvery flower (tetraploid) 3	0.657
	CNS0095613	Golden flower (tetraploid) 1	0.003
	CNS0095614	Golden flower (tetraploid) 2	0.385
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	25.360
	CRR073298	Stem 2	39.765
	CRR073299	Stem 3	22.944
	CRR073300	Leaf 1	62.299
	CRR073301	Leaf 2	68.354
	CRR073302	Leaf 3	54.691
	CRR073303	Juvenile bud 1	23.171
	CRR073304	Juvenile bud 2	9.813
	CRR073305	Juvenile bud 3	21.061
	CRR073306	Third green 1	0.589
	CRR073307	Third green 2	0.065
	CRR073308	Third green 3	0.354
	CRR073309	Second white 1	0.038
	CRR073310	Second white 2	0.057
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.158
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.342
	CRR073320	Tawny withering 3	0.000