Gene detail

Detail information of GWHGAAZE024914

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267677.1	1.5852E-139	PREDICTED: phosphomannomutase [Vitis vinifera]
COG	NP_266726.1	0.000000005	hypothetical protein L165449
Swissprot	tr\|Q1W374\|PMM_WHEAT	2E-139	Phosphomannomutase
trEMBL	tr\|D7UC38\|D7UC38_VITVI	6E-140	Phosphomannomutase {ECO:0000256\|RuleBase:RU361118}
TAIR10	AT2G45790.1	2E-103	phosphomannomutase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51671336	51674647	-
GWHAAZE00000007	mRNA	51671336	51674647	-
GWHAAZE00000007	exon	51671336	51671386	-
GWHAAZE00000007	exon	51671562	51671651	-
GWHAAZE00000007	exon	51671752	51671847	-
GWHAAZE00000007	exon	51671959	51672058	-
GWHAAZE00000007	exon	51672154	51672209	-
GWHAAZE00000007	exon	51672684	51672719	-
GWHAAZE00000007	exon	51672903	51672979	-
GWHAAZE00000007	exon	51673771	51673837	-
GWHAAZE00000007	exon	51673936	51673980	-
GWHAAZE00000007	exon	51674576	51674647	-
GWHAAZE00000007	CDS	51674576	51674647	-
GWHAAZE00000007	CDS	51673936	51673980	-
GWHAAZE00000007	CDS	51673771	51673837	-
GWHAAZE00000007	CDS	51672903	51672979	-
GWHAAZE00000007	CDS	51672684	51672719	-
GWHAAZE00000007	CDS	51672154	51672209	-
GWHAAZE00000007	CDS	51671959	51672058	-
GWHAAZE00000007	CDS	51671752	51671847	-
GWHAAZE00000007	CDS	51671562	51671651	-
GWHAAZE00000007	CDS	51671336	51671386	-

Transcript Sequence
>GWHTAAZE024948 ATGGCAGTCGCGAGGAAACCGGGTTTAATTGCTTTGTTTGATGTGGATGGCACTCTTACCGCACCACGAACGGTGATTACTCCAAAAATGTTAGAATTCATGCGCAAACTCCGAAAGTCTGTTATAGTTGGTATTGTTGGAGGATCTGACCTTGCTAAGATATCAGAACAGCTCGGACAGACAGTTATTAGTGACTATGATTTTGTGTTTCCTGAGAATGGCCTTGTGGCTTATAAGGACGGACAATTAATTGGTACCCAGAGCTTAAAGACACATCTTGGGGAAGAAAAACTCAAGGAGCTCATTAATTTTACACTTCATTACATCGCTGACCTGGATATTCCTATAAAAAGGGGCACGTTTATTGAGTTTAGAAATGGGATGCTTAATATATCGCCAATTGGCAGAAATTGCAGTCAGGAGGAACGAGACGATTTTGAAAAGTACGACTTGATTCACGATGTACGAGGTCAAATGGTATCAGTGCTCTGCAAGAAGTTTGCACACCTTAAACTCAAGTTCTCCATTGGCGGACAAATTAGCTTTGATGTTTTCCCTCAAGGGTGGGATAAGACCTATTGCTTGAGATACCTTGATGATTATAAAGAAATCCATTTCTTTGGAGACAAGACTTACAAGGGCGGAAATGACTACGAGATTTTTGAATCTGAGCGAACCATTGGTCACATA

Network for GWHGAAZE024914

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03332.14	PMM	30	229	8.90E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17497	PMM	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009298	biological_process	GDP-mannose biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0004615	molecular_function	phosphomannomutase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.093
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.276
	SRR3591709	Stem	0.239
	SRR3591710	White floral bud	6.386
	SRR3591711	White flower	0.162
	SRR3591712	Green floral bud	12.834
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.296
	SRR8316896	Juvenile bud stage	15.683
	SRR8316897	Juvenile bud stage	1.955
	SRR8316894	Third green stage	9.506
	SRR8316900	Third green stage	46.932
	SRR8316901	Third green stage	50.915
	SRR8316898	Complete white stage	0.217
	SRR8316899	Complete white stage	0.112
	SRR8316903	Complete white stage	0.135
	SRR8316902	Silver flowering stage	0.095
	SRR8316904	Silver flowering stage	0.304
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.329
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	25.712
	SRR6706287	Light intensity 50%	25.154
	SRR6706288	Light intensity 20%	29.121
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.822
	CNS0095593	Slightly white alabastrum(diploid) 2	14.297
	CNS0095594	Slightly white alabastrum(diploid) 3	27.278
	CNS0095595	Whole white alabastrum(diploid) 2	32.285
	CNS0095596	Whole white alabastrum(diploid) 3	43.635
	CNS0095597	Whole white alabastrum(diploid) 4	36.245
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	1.007
	CNS0095600	Silvery flower (diploied) 3	0.252
	CNS0095601	Golden flower (diploid) 1	0.284
	CNS0095602	Golden flower (diploid) 2	0.166
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.550
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.578
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.843
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.154
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.346
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.309
	CNS0095613	Golden flower (tetraploid) 1	0.063
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.888
CRA001975	CRR073297	Stem 1	4.158
	CRR073298	Stem 2	5.189
	CRR073299	Stem 3	2.845
	CRR073300	Leaf 1	12.160
	CRR073301	Leaf 2	6.354
	CRR073302	Leaf 3	6.565
	CRR073303	Juvenile bud 1	5.174
	CRR073304	Juvenile bud 2	6.009
	CRR073305	Juvenile bud 3	0.074
	CRR073306	Third green 1	0.332
	CRR073307	Third green 2	2.183
	CRR073308	Third green 3	1.078
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.116
	CRR073311	Second white 3	0.226
	CRR073312	Silver flowering 1	0.543
	CRR073313	Silver flowering 2	0.980
	CRR073314	Silver flowering 3	0.491
	CRR073315	Gold flowering 1	2.462
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.807
	CRR073318	Tawny withering 1	1.119
	CRR073319	Tawny withering 2	0.701
	CRR073320	Tawny withering 3	2.489