Gene detail

Detail information of GWHGAAZE024919

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011091772.1	0	PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic isoform X1 [Sesamum indicum]
COG	YP_007157479.1	0.00000006	glycosyl transferase group 1
Swissprot	tr\|Q6DW73\|DGDG2_LOTJA	0	Digalactosyldiacylglycerol synthase 2, chloroplastic
trEMBL	tr\|M5WZA8\|M5WZA8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ19142.1}
TAIR10	AT4G00550.1	7E-179	digalactosyl diacylglycerol deficient 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51717961	51721563	+
GWHAAZE00000007	mRNA	51717961	51721563	+
GWHAAZE00000007	exon	51717961	51718241	+
GWHAAZE00000007	exon	51719187	51719436	+
GWHAAZE00000007	exon	51720298	51720647	+
GWHAAZE00000007	exon	51721095	51721563	+
GWHAAZE00000007	CDS	51717961	51718241	+
GWHAAZE00000007	CDS	51719187	51719436	+
GWHAAZE00000007	CDS	51720298	51720647	+
GWHAAZE00000007	CDS	51721095	51721563	+

Transcript Sequence
>GWHTAAZE024953 ATGGAAAAGAAACAGCATATTGCAATATTTACTACAGCGAGCCTCCCATGGATGACTGGAACTTCAGTCAACCCTCTGTTCCGTGCTGCTTATCTTGCAAAAGATGAGGAGAGAGAGGTTACTTTGGTGATTCCTTGGTTGTCTAGGAAAGATCAAGAACATCTTTATCCTAACAAGCTCACTTTTGGCACACCTTCGAGCAACAGAAGTATGTTCGTCAATGGCTTGAGGAAAGGATTCCATTCATGTCTAGTTTCAACATACTTTTTTATCCGGGACAGGAGCATTCTCGCTATAGGTGACATTACAGAAATCATCCCTGAGGAAGAGGCGGATATTGCTGTCCTTGAGGAACCAGAGCATCTTACATGGTACCATCATGGGATGAGATGGAAAACAAAATTCCGGCTTGTTATAGGAATTGTTCACACAAACTATTTGGAATATGTGAGGAGAGAGAGAAATGGACGATTGCAAGCTTTTCTCCTCAAATACATGAATAGTTGGGTGGTTAATATATATTGCCATAAGGTGATAAGATTATCCGCTGCCACCCAGGATCTTCCAAGATCTGTGATCTGCAACGTTCATGGGGTCAATCCCAAATTCCTCGAGATTGGAATGAAAATGAGAGATAAACAACAACATGGAAGCGAGGCCTTCTCAAAAGGCGCCTACTACATAGGGAAGATGGTATGGAGCAAAGGCTACAAAGAGTTACTTAAACTTCTTCGAGTTCATCAAAAGGTGTTAACTGGACTTGAGGTTGATTTATATGGCAGTGGAGAGGACTCTTCTCAGGTTGAGGAAGCTGCAAAAAAATTGGAATTAACAGTTAGGGTTCATCCAGGGCGAGATCATGCTGATCCTTTATTTCATGACTATAAAGTGTTCCTCAATCCAAGCACCACTGACGTGGTCTGTACAACCACAGCTGAAGCCTTGGCAATGGGCAAAATAGTTGTATGTGCCAATCACCCCTCGAATGACTTCTTCAAACAATTTCCAAATTGCCGAACCTATGATGATGGCGAGGGGTTTGTTAAAGCTACCCGGGATGCACTGGCCCAAGAACCTGCCCAGCTGACTGATGCACAGCGGCATGAGCTGTCGTGGGACGCCGCCACACAACGGTTCCTAACGACTGCAGAGCTGGACAATGTGGACCCTACAAAGAAACTCACAAAGTCGGGCTCGAAGAAGCCGTTTTTGTCCTCGTCTTTGAGCATGCCGAGGAATTTTGAAGATGCTTCAGCTTTGTTGCATTATGTTGGGACCGGGTTTGTGAGTTCGAACCCCGATAAAGAGCTATGTAAAGAGCTTGGTTTGGATGGCTCCTCTAAAAAATGA

Network for GWHGAAZE024919

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13692.7	Glyco_trans_1_4	226	332	4.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09480	DGD	Metabolic pathways	map01100
K09480	DGD	Glycerolipid metabolism	map00561

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.311
	SRR3591706	second leaf	9.358
	SRR3591707	mature leaf	13.455
	SRR3591708	Shoot apex	12.175
	SRR3591709	Stem	28.008
	SRR3591710	White floral bud	25.946
	SRR3591711	White flower	31.842
	SRR3591712	Green floral bud	25.953
	SRR3591713	Yellow flower	34.592
SRP173429	SRR8316895	Juvenile bud stage	11.870
	SRR8316896	Juvenile bud stage	17.651
	SRR8316897	Juvenile bud stage	8.573
	SRR8316894	Third green stage	8.998
	SRR8316900	Third green stage	27.057
	SRR8316901	Third green stage	27.301
	SRR8316898	Complete white stage	17.107
	SRR8316899	Complete white stage	38.254
	SRR8316903	Complete white stage	22.314
	SRR8316902	Silver flowering stage	15.869
	SRR8316904	Silver flowering stage	20.549
	SRR8316905	Silver flowering stage	10.255
	SRR8316906	Gold flowering stage	41.281
	SRR8316907	Gold flowering stage	33.060
	SRR8316908	Gold flowering stage	38.298
SRP132670	SRR6706286	Control	20.147
	SRR6706287	Light intensity 50%	19.714
	SRR6706288	Light intensity 20%	20.749
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.567
	CNS0095593	Slightly white alabastrum(diploid) 2	14.416
	CNS0095594	Slightly white alabastrum(diploid) 3	15.088
	CNS0095595	Whole white alabastrum(diploid) 2	15.298
	CNS0095596	Whole white alabastrum(diploid) 3	16.184
	CNS0095597	Whole white alabastrum(diploid) 4	12.343
	CNS0095598	Silvery flower (diploied) 1	9.734
	CNS0095599	Silvery flower (diploied) 2	7.969
	CNS0095600	Silvery flower (diploied) 3	25.270
	CNS0095601	Golden flower (diploid) 1	9.560
	CNS0095602	Golden flower (diploid) 2	27.145
	CNS0095603	Golden flower (diploid) 3	27.057
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.747
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.396
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.335
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.539
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.990
	CNS0095610	Silvery flower (tetraploid) 1	24.007
	CNS0095611	Silvery flower (tetraploid) 2	25.423
	CNS0095612	Silvery flower (tetraploid) 3	23.607
	CNS0095613	Golden flower (tetraploid) 1	15.854
	CNS0095614	Golden flower (tetraploid) 2	22.559
	CNS0095615	Golden flower (tetraploid) 3	33.446
CRA001975	CRR073297	Stem 1	17.854
	CRR073298	Stem 2	18.584
	CRR073299	Stem 3	16.251
	CRR073300	Leaf 1	23.622
	CRR073301	Leaf 2	21.675
	CRR073302	Leaf 3	19.192
	CRR073303	Juvenile bud 1	21.252
	CRR073304	Juvenile bud 2	22.992
	CRR073305	Juvenile bud 3	18.365
	CRR073306	Third green 1	18.859
	CRR073307	Third green 2	20.743
	CRR073308	Third green 3	19.354
	CRR073309	Second white 1	16.253
	CRR073310	Second white 2	19.154
	CRR073311	Second white 3	15.508
	CRR073312	Silver flowering 1	13.475
	CRR073313	Silver flowering 2	8.156
	CRR073314	Silver flowering 3	8.496
	CRR073315	Gold flowering 1	15.089
	CRR073316	Gold flowering 2	19.049
	CRR073317	Gold flowering 3	11.179
	CRR073318	Tawny withering 1	15.298
	CRR073319	Tawny withering 2	15.715
	CRR073320	Tawny withering 3	15.903