Gene detail

Detail information of GWHGAAZE024923

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009778598.1	0	PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Nicotiana sylvestris]
Swissprot	tr\|Q93Z92\|RING4_ARATH	4E-143	E3 ubiquitin-protein ligase At4g11680
trEMBL	tr\|M1CNN5\|M1CNN5_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400071379}
TAIR10	AT4G11680.1	1E-103	Zinc finger, C3HC4 type (RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	51789983	51794441	-
GWHAAZE00000007	mRNA	51789983	51794441	-
GWHAAZE00000007	exon	51789983	51790159	-
GWHAAZE00000007	exon	51790806	51790970	-
GWHAAZE00000007	exon	51791746	51791878	-
GWHAAZE00000007	exon	51792517	51792636	-
GWHAAZE00000007	exon	51792843	51792908	-
GWHAAZE00000007	exon	51793894	51794441	-
GWHAAZE00000007	CDS	51793894	51794441	-
GWHAAZE00000007	CDS	51792843	51792908	-
GWHAAZE00000007	CDS	51792517	51792636	-
GWHAAZE00000007	CDS	51791746	51791878	-
GWHAAZE00000007	CDS	51790806	51790970	-
GWHAAZE00000007	CDS	51789983	51790159	-

Transcript Sequence
>GWHTAAZE024957 ATGTCGACGGCTCGCGAAGGCAGCTCCGGCGGAGGAATCGACACGACGCCGTTCCTGCCCGGCTCTATCACCGACCAGATCTTCCGACGGAGCCGTCGCTTAGTCCGCCGCCCTCCGAGCCTCGCTCGGTTCCTTCGCCTCTCCGGCGGCCGGCGGCTCATGCGAGAACCATCGATGCGCGTGCGCGAGTCCGCCGCCGAGCAAATAGAGGAGCGGCAGAGCGATTGGGCCTACTCGAAGCCGATAGTGATCCTAGACCTGATATGGAATTTGGCGTTCGTTATCGCATCCATTGTTTTTTTAACGATGAAACGCAACAAGTCTAGCTCAATACTATTGAGGATTTGGATAATTGGATATGCGGTTCAGTGTGTGATTCATATGGTTTGTGTTTCGGTTGAGTATAAGAGAAGGTATCACCGGAGGACGAGTGAAGGGTTAGAGCCGAGCGGAGGGAGTTGGCAGAGTAGTAATTCGAGTTCCGGTAGTGATGGAGGGGAGGGAGGAGATTTTGGTTCTGAAAGGGTTCAAAATGGTGAGGAGACTAGTAGCAACAAAGATGCTTTGGGATCTTTACATTTGGTATCTGTAAATGTTAGGCCACAAATTCCGAGTCTCGCTAAGCATCTGGAGTCCGCAATTACAATGTTTTCATTCATTTGGTGGATCATTGGATTCTATTGGGTATCTGTTGGTGGGCGGAATTTGTCTCATGATTCGCCTCAACTTTACTGGCTTTGTGTTACATTCTTGGCATTCGATGTGTTCTTTGTGGTTATCTGTGTTGCTGTGGCTTGTGTAATTGGTATTGCTGTCTGCTGCTGTCTTCCATGTATTATTGCAATTTTATACGCAGTGACAGATCAGGAAGGAGCAACTAAGGAGGATATAGAAGGGCTAAGCAAGTATAGATTCCGTAGATTTGGCGATTGTGAGAAACAAAACGGAGATAATCAAGAATCTTTTGGCGGAATAATGACGGAATGCGACACTGATTCACCTGCCGAACATGTTCTCCCACTTGGGGATGCTGAATGTTGCATCTGCCTTTGCTCATATGAAGACGGGGCTGAACTACGCGAACTTCCATGCCGTCATCATTTTCACTGCACCTGCATAGACAAATGGCTGTACATAAACGCCATTTGTCCCCTCTGCAAGTTTAATATACTAAAGAACGGTGTCCAAAGCGGCAGCGAAGAGGTATAA

Network for GWHGAAZE024923

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	345	387	2.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.751
	SRR3591706	second leaf	11.331
	SRR3591707	mature leaf	25.594
	SRR3591708	Shoot apex	13.925
	SRR3591709	Stem	25.072
	SRR3591710	White floral bud	25.418
	SRR3591711	White flower	27.824
	SRR3591712	Green floral bud	26.006
	SRR3591713	Yellow flower	22.607
SRP173429	SRR8316895	Juvenile bud stage	13.136
	SRR8316896	Juvenile bud stage	18.081
	SRR8316897	Juvenile bud stage	7.789
	SRR8316894	Third green stage	6.956
	SRR8316900	Third green stage	24.463
	SRR8316901	Third green stage	21.244
	SRR8316898	Complete white stage	13.831
	SRR8316899	Complete white stage	32.960
	SRR8316903	Complete white stage	22.995
	SRR8316902	Silver flowering stage	13.004
	SRR8316904	Silver flowering stage	21.139
	SRR8316905	Silver flowering stage	9.990
	SRR8316906	Gold flowering stage	25.717
	SRR8316907	Gold flowering stage	23.027
	SRR8316908	Gold flowering stage	19.243
SRP132670	SRR6706286	Control	24.234
	SRR6706287	Light intensity 50%	23.975
	SRR6706288	Light intensity 20%	25.886
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.380
	CNS0095593	Slightly white alabastrum(diploid) 2	13.284
	CNS0095594	Slightly white alabastrum(diploid) 3	17.086
	CNS0095595	Whole white alabastrum(diploid) 2	19.498
	CNS0095596	Whole white alabastrum(diploid) 3	19.012
	CNS0095597	Whole white alabastrum(diploid) 4	18.222
	CNS0095598	Silvery flower (diploied) 1	17.458
	CNS0095599	Silvery flower (diploied) 2	13.100
	CNS0095600	Silvery flower (diploied) 3	36.828
	CNS0095601	Golden flower (diploid) 1	16.681
	CNS0095602	Golden flower (diploid) 2	25.996
	CNS0095603	Golden flower (diploid) 3	29.337
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.408
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.062
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.824
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.757
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.483
	CNS0095610	Silvery flower (tetraploid) 1	34.271
	CNS0095611	Silvery flower (tetraploid) 2	32.616
	CNS0095612	Silvery flower (tetraploid) 3	37.250
	CNS0095613	Golden flower (tetraploid) 1	16.879
	CNS0095614	Golden flower (tetraploid) 2	26.261
	CNS0095615	Golden flower (tetraploid) 3	27.083
CRA001975	CRR073297	Stem 1	15.176
	CRR073298	Stem 2	14.502
	CRR073299	Stem 3	15.239
	CRR073300	Leaf 1	21.230
	CRR073301	Leaf 2	16.763
	CRR073302	Leaf 3	17.195
	CRR073303	Juvenile bud 1	25.319
	CRR073304	Juvenile bud 2	27.226
	CRR073305	Juvenile bud 3	25.788
	CRR073306	Third green 1	21.542
	CRR073307	Third green 2	19.876
	CRR073308	Third green 3	16.674
	CRR073309	Second white 1	22.314
	CRR073310	Second white 2	21.184
	CRR073311	Second white 3	16.651
	CRR073312	Silver flowering 1	14.999
	CRR073313	Silver flowering 2	20.695
	CRR073314	Silver flowering 3	14.374
	CRR073315	Gold flowering 1	11.309
	CRR073316	Gold flowering 2	10.342
	CRR073317	Gold flowering 3	16.116
	CRR073318	Tawny withering 1	9.534
	CRR073319	Tawny withering 2	9.885
	CRR073320	Tawny withering 3	12.997