Gene detail

Detail information of GWHGAAZE024968

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279696.1	0	PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Vitis vinifera]
COG	YP_007567780.1	3E-30	RalF protein, translocated into host cells by the Dot/Icm system
Swissprot	tr\|Q9LPC5\|BIG3_ARATH	0	Brefeldin A-inhibited guanine nucleotide-exchange protein 3
trEMBL	tr\|F6I376\|F6I376_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61393.1}
TAIR10	AT1G01960.1	0	SEC7-like guanine nucleotide exchange family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	52769102	52787439	-
GWHAAZE00000007	mRNA	52769102	52787439	-
GWHAAZE00000007	exon	52769102	52770138	-
GWHAAZE00000007	exon	52771491	52772164	-
GWHAAZE00000007	exon	52773038	52773416	-
GWHAAZE00000007	exon	52774100	52774421	-
GWHAAZE00000007	exon	52775388	52775887	-
GWHAAZE00000007	exon	52776638	52776911	-
GWHAAZE00000007	exon	52778687	52778973	-
GWHAAZE00000007	exon	52780614	52781036	-
GWHAAZE00000007	exon	52781460	52781760	-
GWHAAZE00000007	exon	52781897	52782214	-
GWHAAZE00000007	exon	52784755	52785271	-
GWHAAZE00000007	exon	52785740	52785804	-
GWHAAZE00000007	exon	52785939	52786345	-
GWHAAZE00000007	exon	52787404	52787439	-
GWHAAZE00000007	CDS	52787404	52787439	-
GWHAAZE00000007	CDS	52785939	52786345	-
GWHAAZE00000007	CDS	52785740	52785804	-
GWHAAZE00000007	CDS	52784755	52785271	-
GWHAAZE00000007	CDS	52781897	52782214	-
GWHAAZE00000007	CDS	52781460	52781760	-
GWHAAZE00000007	CDS	52780614	52781036	-
GWHAAZE00000007	CDS	52778687	52778973	-
GWHAAZE00000007	CDS	52776638	52776911	-
GWHAAZE00000007	CDS	52775388	52775887	-
GWHAAZE00000007	CDS	52774100	52774421	-
GWHAAZE00000007	CDS	52773038	52773416	-
GWHAAZE00000007	CDS	52771491	52772164	-
GWHAAZE00000007	CDS	52769527	52770138	-
GWHAAZE00000007	three_prime_UTR	52769102	52769526	-

Transcript Sequence
>GWHTAAZE025002 ATGGCTTCTTCGGAAGCCGATTCCCGTCTCAACCAGGTCCTAACCCTAGCCCTAGAGAAGATCATCAAGAACGGATCATGGAGAAAACACTCAAAACTCGTCCACGAATGTAAATCTGTTCTTGAGAGGCTCAATTCACCGGAGAAACATACCGACCAATCAGATTCTGACACGTCATCAGTCCCACCGGTTCTCTACGATTCCGGTACCAGCGAACTCTCATTTATTGACTCTGAGTTCATTCTAAGCCCTATCATCAATGCGTGTTCCTCCGGTAATGTTAAGATCGCCGAGCCTGCACTCGATTGCATACAAAAGCTCATTGCACATGGCTGTATTCGAGGTGAGGCGGATTCAACTGGTGGTCCCGAGGGGAAATTGCTGTCCAAATTGATCGAATCAGTTTGTAAATGCCACGATTTGGGGGACGAAGGGGTGGAATTCGAAGGCGTCGTTGATACAAATGCTGGTGATTGTGTTCCGGCGAATGGAGGCGGACTCGTCCACGTGGCGGAGTTGATGGAGCCAGCAGAGAAGCTTGATGATGATGGGTCGATGACCATGTTTGTTCAAGGTTTTATTACGAAGATTATGCAGGACATTGATGGGGTACTCAATCCAGCTACGCCCAAGAGTTTAGCTGGAGGGGTACACGATGGTGCATTTGAGACGAAGACGTCGACGGTGGAATCAACAAATCCGGCTGATTTGTTGGATTCTACGGACAAGGATATGTTGGATGCGAAGTATTGGGAGATTAGTATGTATAAGACTGCATTGGAGGGGCGAAAAGGGGAATTGGCGGATGGAGAGGTGGAGAGGGATGATGATTTGGAGGTTCAGATTGGGAACAAGTTGAGAAGAGATGCATTTTTAGTGTTTAGAGCGCTTTGTAAGCTGTCAATGAAGACACCGCCGAAGGAGGCATTGGTTGATCCTCAATTGATGCGGGGAAAGATCGTTGCTTTGGAGTTGCTCAAGATTTTGTTGGAGAATGCAGGAGCAATCTTTAGGACCAGCGAAAGGTTTTTAGGTGCCATTAAACAATACTTGTGCTTGTCATTGTTGAAGAACAGTGCTTCGACCCTTATGATTGTTTTCCAGCTTTCTTGCTCAATTTTCATTAGTTTGGTGTCAAGATTTAGAGCTGGATTGAAGGCAGAGATTGGAGTATTCTTCCCTATGATTGTTCTCAGAGTTCTAGAAAATGTCACTCAGCCCAATTTTCAGCAGAAGATGATTGTACTTCGATTTCTTGAGAAGCTCTGTGTGGATTCACAAATCTTGGTAGATATATTCATTAACTATGATTGTGATGTCAGTTCATCAAACATATTTGAGAGAATGGTCAATGGACTTCTGAAAACTGCTCAAGGGGTCCCACCTGGTGCTGCCACTACACTATTGCCACCTCAGGAGGTGTCGATGAAACTTGAAGCTATGAAGTGCCTAGTGGCAGTTCTTAAGTCAATGGGAGACTGGATGAATAAACAATTACGCATACCAGATCCTAATTCCATAAAGAAACCCGAGGTTGCTGAGAACAATTCTGAACTCGGAACTCTTCCAGTGGCAAATGGGAACGGGGATGAACCTGTAGAAGGATCAGATTCTCATTCCGAAGCATCTAGCGATGTTTCTGATGAAGGTATATCTCTTTTCAATCGGAAACCCAAAAAGGGAATTGAATTCCTGATAAATGTGAACAAGGTTGGCAGTTCGGCAGAAGATATAGCAGCTTTCCTCAAAAATGCGTCTGGTTTGAACAAAACTTTGATTGGCGATTACCTTGGGGAAAGGGAAGAGTTATCACTTAAAGTAATGCATGCATATGTGGATTCCTTCGATTTTCAAGGCATGGAGTTTGACGAGGCAATTAGGGCCTTTCTACAGGGTTTTAGATTGCCCGGTGAAGCACAGAAGATTGACCGTATTATGGAAAAATTTGCTGAACGTTACTGCAAGTGTAATCCAAAGGCTTTCATTAGTGCTGACACGGCATATGTCCTTGCTTACTCTGTCATATTGCTCAATACAGATGCACATAACCCTATGGTTAAGAACAAGATGTCAGCCGATGATTTTATAAGGAACAATCGTGGCATAGATGATGGAAAAGACTTACCCGAGGAGTACTTGAGATCATTGTTTGAACGAATATTGAGAAATGAAATCAAAATGAAAGAACATGATTGGGCTCCTCAGCAGAGGCAGTCGGTGAACTCTAACAGAATTTTAGGGTTAGACAGTATATTGAATATTGTTATCCCCAAGCGGGGGGAGGAAAATCATACCAGTGACGATCTCATGCGACACATGCAAGAACAATTTAAAGAAAAAGCTCGCAAATCTGAGTCAGTTTATTATGCAGCAACAGATGTAGTGATCCTTAGATTTATGATAGAGGTATGCTGGGCCCCTATGTTGGCTGCCTTCAGTGTTCCTCTCGACCAAAGTGATGATGAAGTAGTAATAGCCCAATGTTTGGAAGGTTTCCGTCATGCAATCCATGTTACTGCAGTACTGTCTATGAAGACTCATAGAGATGCTTTTATCACATCACTAGCAAAGTTTACTTCCCTCCACTCACCTGCTGATATCAAACAGAAAAACATAGATGCCATTAAGGCAATAGTTACAATTGCAGATGAAGACGGGAATTACTTACAGGAGGCCTGGGAACACATTTTGACATGTGTTTCTCGGTTCGAGCATTTGCATCTCTTGGGAGAGGGGGCCCCGCCCGATGCGACTTTCTTTGCAATCAATCAAAATGAGCTTGACAAATCAAAACAACCCAAGTCAAATATCCTCCCCGTTTTGAAAAAAAAGGGACCTGGGCGTATTCAGTATGCAGCTGCAGCAATGAGACGGGGTTCATATGATAGCGCTGGTATTGGTGGCAATGCTTCTGCTGGGATTACACCTGACCAAGTCAACAATTTGGTCTCCAACTTAAACATGTTGGAACAAGTTGGTGAAATGAATCGCATATTCGCACGGAGTCAGAAGTTAAACAGTGAGGCAATAATTGACTTTGTGAAGGCTCTTTGCAAGGTATCTATGGAAGAATTGCGATCTCCGTTGGATCCTCGGGTTTTCAGCCTTACAAAAATTGTTGAGATTGCGCACTATAACATGAATCGGATCAGGCTCGTTTGGTCAAGCATCTGGCTTGTGCTCTCTGATTTCTTTGTGAACATTGGCTGTTCTGAAAACCTTTCGATTGCAATTTTCGCGATGGATTCTTTACGCCAATTATCAATGAAATTTTTGGAGCGTGAAGAATTGGCTAATTACAATTTTCAGAATGAGTTCATGAAGCCCTTTGTAATCGTTATGCGCAAGAGCAGCGCTGTTGAAATCAGAGAATTAATCATCAGATGTGTGTCTCAAATGGTTTTATCTCGTGTAAATAACGTCAAGTCCGGATGGAAAAGCATGTTTATGGTCTTTACAACGGCAGCTTATGATGACCACAAAAACATTGTGCTTTTGGCCTTTGAAATAATCGAGAAGATTGTGCGAGATTACTTCCCCTATATTACCGAGACCGAAACCACTACATTTACGGACTGTGTAAATTGTCTGATTGCTTTCACTAACAGTAGATTCAGCAAAGACATTAGTCTAAATGCAATTGGTTTCCTTCAATATTGTGCAACGAAACTTGCTGAGGGAGATCTAGGCTCCACAAAGAATAAGGACGAAGAAACTTCTGGAAAAATTTCTCCATCTTCTATCCAGAATGGAAAAGGTAGAAAACACGAAAACGGAGAGTTGACAGATAAGGAAGATCATCTCTATTTTTGGTTCCCCTTGTTGGCTGGATTATCGGAACTTAGCTTCGACACGAGGCCGGAAATCAGAAAGAGTGCTCTACAAGTACTTTTTGACACTTTACGCAACCATGGTCATCATTTCTCTCTACCATTATGGGAAAGGGTATTTGAGTCGGTTCTCTTTCCAATCTTTGACTATGTACGGCACGCTATCGATCCATCAGGGGAGAACTCACCTGGCCACGAGATTAACGGTGATGATAGCGAGCTCGATCAAGATACATGGCTATATGAGACATGCACACTAGCACTCCAACTGGTTGTCGATCTCTTTGTTAAATTTTACGACACTGTCAACCCGCTTTTGGTCAAAGTGCTCAAGTTGTTAGTAAGTTTCATCAAGAGGCCCCACCAAAGTCTTGCCGGTATTGGGATTGCTGCATTTGTACGGTTGATGAGCAATGCCGGTGTTCTTTTCTCTGATGATAAGTGGCTAGAAGTTGTTTTGTCTCTAAAAGAAGCAGCGAGTAGTACTCTTCCCGATTTCTCTTTCGTTGACGAAGATATTAATCTGGTTTGGAGCAATGGAGACTCGACTAGATGGGACAATGGAGAACCTGGTGGGTCTGGTTTGGCTGAAGATGATTTGGACCTTAGGAGACACCGGCTCTCTTCTGCTGTTTCTGATGCTAAGTGCCGTGCAGCTGTTCAACTTTTATTGGCAGTAGTGGAGATCTACAACATGTATAGACCTCAACTATCACCAAAAAACACGGTACTAATCTTCGACGCGGTCCATGCCGTAGCATTTCACGCTCACAAGATCAACACTGATTCCACATTACGCTCTAAGCTCCTCCAGTTCGGCTCCATGACCCAAATGCAAGACCCTCCACTATTACGTCTTGAGAACGAATCTTACCTAATCTGCCTAACGTTCTTACAAAATCTCGCACTTGATAGACCCCCAAATTACGAAGAATCAGTTGTGGAATCTCACCTCGTCGACCTTTGCCGAGAAATACTACAATTCTACATCGAAAATGCTCGGTCCGGAAAAATACCTGAGTCGCACTCAGGTGCCCCCCCCAATTGGTCAATCCCTTTGGGGTCCGGTAAACGGAGAGAATTGGCTGCACGTGCGTCTCTTATAGTTGCCACTCTACAGGCTATTTGTAGTTTAGGAGATTCATCGTTCGAGAAGAACATGCCTTGCTTCTTCCCTCTGTTTTCAAGCTTGATAAGTTGCGAGCACGGGTCGAATGAGATTCAGGTAGCTCTTAGTGAAATGCTCGGCTCGTCAGTGGGTCCTCTTTTGCTTCGGTCATGTTGAGATGTATGGTTCTTTTAATCTGAATCTTTGCATTTTTCTTGTATTGATTAATTTTTGAAATATAGTCTTTTGTAGTTTTTATGAAGCAGCTAGAAATGTTTGTTTTGTTGATTGCCAAGTGTTGACGAATTTGTGTAGCTTTATTTAGGGGCTTTTTGCTCCATTTAGAAGCAATAGATGTTATCTGGAATTCTTGATGTATGCGTACAAGATGAAAGTTTTCTTTAGGATTACTCTTACGGATAGCTAGTTCACGATGTGTATGGCTGGATTTTGGTCACTCAGTGTTATAGCGTCCAGCAGGTAAGCACTTGCCAATTTTCAGATGTTTTGATACTCGTGTATAGTACGGTTTATATCTTTTGTAAGTTTTGTAATCGTACCGCCTCTTAAATAAAGATTGTTTTTTCTTTTTTAGGACATAA

Network for GWHGAAZE024968

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16213.6	DCB	6	147	1.80E-20
PF12783.8	Sec7_N	287	445	2.00E-43
PF01369.21	Sec7	546	725	1.30E-71
PF09324.11	DUF1981	1090	1172	1.50E-29
PF16206.6	Mon2_C	1199	1331	8.90E-11

Protein Sequence

>GWHPAAZE024986
MASSEADSRLNQVLTLALEKIIKNGSWRKHSKLVHECKSVLERLNSPEKHTDQSDSDTSSVPPVLYDSGTSELSFIDSEFILSPIINACSSGNVKIAEPALDCIQKLIAHGCIRGEADSTGGPEGKLLSKLIESVCKCHDLGDEGVEFEGVVDTNAGDCVPANGGGLVHVAELMEPAEKLDDDGSMTMFVQGFITKIMQDIDGVLNPATPKSLAGGVHDGAFETKTSTVESTNPADLLDSTDKDMLDAKYWEISMYKTALEGRKGELADGEVERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALVDPQLMRGKIVALELLKILLENAGAIFRTSERFLGAIKQYLCLSLLKNSASTLMIVFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVTQPNFQQKMIVLRFLEKLCVDSQILVDIFINYDCDVSSSNIFERMVNGLLKTAQGVPPGAATTLLPPQEVSMKLEAMKCLVAVLKSMGDWMNKQLRIPDPNSIKKPEVAENNSELGTLPVANGNGDEPVEGSDSHSEASSDVSDEGISLFNRKPKKGIEFLINVNKVGSSAEDIAAFLKNASGLNKTLIGDYLGEREELSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFISADTAYVLAYSVILLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERILRNEIKMKEHDWAPQQRQSVNSNRILGLDSILNIVIPKRGEENHTSDDLMRHMQEQFKEKARKSESVYYAATDVVILRFMIEVCWAPMLAAFSVPLDQSDDEVVIAQCLEGFRHAIHVTAVLSMKTHRDAFITSLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAINQNELDKSKQPKSNILPVLKKKGPGRIQYAAAAMRRGSYDSAGIGGNASAGITPDQVNNLVSNLNMLEQVGEMNRIFARSQKLNSEAIIDFVKALCKVSMEELRSPLDPRVFSLTKIVEIAHYNMNRIRLVWSSIWLVLSDFFVNIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSSAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIVRDYFPYITETETTTFTDCVNCLIAFTNSRFSKDISLNAIGFLQYCATKLAEGDLGSTKNKDEETSGKISPSSIQNGKGRKHENGELTDKEDHLYFWFPLLAGLSELSFDTRPEIRKSALQVLFDTLRNHGHHFSLPLWERVFESVLFPIFDYVRHAIDPSGENSPGHEINGDDSELDQDTWLYETCTLALQLVVDLFVKFYDTVNPLLVKVLKLLVSFIKRPHQSLAGIGIAAFVRLMSNAGVLFSDDKWLEVVLSLKEAASSTLPDFSFVDEDINLVWSNGDSTRWDNGEPGGSGLAEDDLDLRRHRLSSAVSDAKCRAAVQLLLAVVEIYNMYRPQLSPKNTVLIFDAVHAVAFHAHKINTDSTLRSKLLQFGSMTQMQDPPLLRLENESYLICLTFLQNLALDRPPNYEESVVESHLVDLCREILQFYIENARSGKIPESHSGAPPNWSIPLGSGKRRELAARASLIVATLQAICSLGDSSFEKNMPCFFPLFSSLISCEHGSNEIQVALSEMLGSSVGPLLLRSC

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18442	ARFGEF, BIG	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	biological_process	regulation of ARF protein signal transduction
GO:0005086	molecular_function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.282
	SRR3591706	second leaf	27.402
	SRR3591707	mature leaf	23.884
	SRR3591708	Shoot apex	37.206
	SRR3591709	Stem	42.219
	SRR3591710	White floral bud	28.020
	SRR3591711	White flower	31.605
	SRR3591712	Green floral bud	52.619
	SRR3591713	Yellow flower	24.647
SRP173429	SRR8316895	Juvenile bud stage	29.189
	SRR8316896	Juvenile bud stage	41.679
	SRR8316897	Juvenile bud stage	22.844
	SRR8316894	Third green stage	19.310
	SRR8316900	Third green stage	50.885
	SRR8316901	Third green stage	48.996
	SRR8316898	Complete white stage	8.219
	SRR8316899	Complete white stage	41.626
	SRR8316903	Complete white stage	20.306
	SRR8316902	Silver flowering stage	9.759
	SRR8316904	Silver flowering stage	17.242
	SRR8316905	Silver flowering stage	6.382
	SRR8316906	Gold flowering stage	23.929
	SRR8316907	Gold flowering stage	20.544
	SRR8316908	Gold flowering stage	21.975
SRP132670	SRR6706286	Control	45.381
	SRR6706287	Light intensity 50%	44.687
	SRR6706288	Light intensity 20%	48.123
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.560
	CNS0095593	Slightly white alabastrum(diploid) 2	29.606
	CNS0095594	Slightly white alabastrum(diploid) 3	31.995
	CNS0095595	Whole white alabastrum(diploid) 2	39.136
	CNS0095596	Whole white alabastrum(diploid) 3	42.247
	CNS0095597	Whole white alabastrum(diploid) 4	37.765
	CNS0095598	Silvery flower (diploied) 1	27.607
	CNS0095599	Silvery flower (diploied) 2	23.704
	CNS0095600	Silvery flower (diploied) 3	50.323
	CNS0095601	Golden flower (diploid) 1	21.834
	CNS0095602	Golden flower (diploid) 2	53.293
	CNS0095603	Golden flower (diploid) 3	51.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.198
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.901
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.838
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.358
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.727
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.967
	CNS0095610	Silvery flower (tetraploid) 1	34.060
	CNS0095611	Silvery flower (tetraploid) 2	35.869
	CNS0095612	Silvery flower (tetraploid) 3	25.776
	CNS0095613	Golden flower (tetraploid) 1	16.722
	CNS0095614	Golden flower (tetraploid) 2	34.644
	CNS0095615	Golden flower (tetraploid) 3	26.492
CRA001975	CRR073297	Stem 1	52.213
	CRR073298	Stem 2	51.124
	CRR073299	Stem 3	41.730
	CRR073300	Leaf 1	60.710
	CRR073301	Leaf 2	54.912
	CRR073302	Leaf 3	45.549
	CRR073303	Juvenile bud 1	52.605
	CRR073304	Juvenile bud 2	32.419
	CRR073305	Juvenile bud 3	65.975
	CRR073306	Third green 1	11.097
	CRR073307	Third green 2	10.143
	CRR073308	Third green 3	14.179
	CRR073309	Second white 1	14.092
	CRR073310	Second white 2	13.759
	CRR073311	Second white 3	15.342
	CRR073312	Silver flowering 1	14.154
	CRR073313	Silver flowering 2	13.733
	CRR073314	Silver flowering 3	11.293
	CRR073315	Gold flowering 1	17.371
	CRR073316	Gold flowering 2	27.367
	CRR073317	Gold flowering 3	20.310
	CRR073318	Tawny withering 1	49.072
	CRR073319	Tawny withering 2	38.478
	CRR073320	Tawny withering 3	45.224