Gene detail

Detail information of GWHGAAZE024986

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007052086.1	0	UDP-D-glucuronate 4-epimerase 3 [Theobroma cacao]
COG	YP_004650942.1	2E-112	UDP-glucuronate 4-epimerase 4
Swissprot	tr\|O81312\|GAE3_ARATH	0	UDP-glucuronate 4-epimerase 3
trEMBL	tr\|A0A061E1X2\|A0A061E1X2_THECC	0	UDP-D-glucuronate 4-epimerase 3 {ECO:0000313\|EMBL:EOX96243.1}
TAIR10	AT4G00110.1	0	UDP-D-glucuronate 4-epimerase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	53060927	53063721	-
GWHAAZE00000007	mRNA	53060927	53063721	-
GWHAAZE00000007	exon	53060927	53061683	-
GWHAAZE00000007	exon	53063168	53063721	-
GWHAAZE00000007	CDS	53063168	53063721	-
GWHAAZE00000007	CDS	53060927	53061683	-

Transcript Sequence
>GWHTAAZE025020 ATGAAGCAAATGTCTCACATTGACAATATCCCATCAACCCCAGGGAAATTCAAGTTGGAGAAATCCCCATACATTCACAGATTCAGAATCCTACACTCTTCAATTGCAAAGCTCACTTTCTGGTCCTTCATTTTCTTGGCCCTAATCTTGATCTTCTTTTTTCGGTCACCGGCGGCGACCTCCCCGTCGCCGGCGGACCCCCGCCGGTCACTTCGGACCCAATCTTGGGGCGGACCAGGATGGGAAAAACGAGTCCGTTCCTCGGCCCGGATCCGGACTCGGAATGGAATAGCCGTTTTAGTCACCGGCGCCGCCGGTTTCGTCGGAACACACGTCAGCTCGGCCCTAAAACGTCGTGGCGACGGCGTTTTGGGGTTAGATAACTTCAATGACTACTACGATCCGTCGCTAAAAAGGGCCCGGCAGGAACTTTTGGAACGTGCCGGAGTTTTCATCGTCGACGGAGATATAAACGACGGCGAACTTTTGAAGAAGCTATTCGACGTCGTTCCGTTCACCCACGTTATGCATCTTGCTGCTCAGGCCGGCGTTAGGTACGCTATGCAAAACCCTAAATCTTATATCCATAGCAACATTGCTGGTCTTGTTAGCATCCTTGAAGTTTGCAAATCTGCAAACCCTCAACCTGCCATTGTTTGGGCATCTTCAAGTTCTGTTTATGGCCTAAATACAAAAGTTCCCTTTTCCGAAAAAGACCGAACCGATCAACCTGCAAGCCTTTATGCAGCCACAAAGAAAGCAGGTGAAGAAATTGCCCATACTTATAATCACATCTATGGCCTTTCGATTACCGGGTTGAGATTCTTCACTGTTTACGGACCTTGGGGTAGGCCAGATATGGCCTATTTCTTCTTTACTAGGGATATTTTGAAAGGGAAATCGATTCCAATCTTCGAAGCTGCTAATCATGGAACTGTTGCTAGAGATTTCACCTACATTGATGATATTGTAAAGGGTTGCTTAGCTTCATTGGATACAGCTGAGAAAAGTACCGGTAGTGGGGGGAAGAAGAAAGGGCCAGCTCAATTGAGGGTTTTCAATTTGGGGAACACTTCACCTGTTCCAGTCACGGATCTTGTTAGTATTTTGGAGAAATTGTTGAAAGCGAAGGCAAATAAGAGGATAATGAAGTTGCCACGAAATGGTGATGTTCCATATACGCATGCAAATATAAGTTTGGCTCATAGAGAGCTTGGATATAGGCCTACCACAGATTTGCAGATGGGATTGAAGAGATTCGTACGGTGGTACCTTAGTTACTATGGCTCCGGGAAGAAGAGTTCACAGTGA

Network for GWHGAAZE024986

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01370.22	Epimerase	99	336	2.00E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08679	E5.1.3.6	Metabolic pathways	map01100
K08679	E5.1.3.6	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0050662	molecular_function	coenzyme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.066
	SRR3591706	second leaf	26.547
	SRR3591707	mature leaf	4.771
	SRR3591708	Shoot apex	26.326
	SRR3591709	Stem	11.775
	SRR3591710	White floral bud	34.077
	SRR3591711	White flower	7.920
	SRR3591712	Green floral bud	47.440
	SRR3591713	Yellow flower	4.534
SRP173429	SRR8316895	Juvenile bud stage	27.441
	SRR8316896	Juvenile bud stage	21.611
	SRR8316897	Juvenile bud stage	22.997
	SRR8316894	Third green stage	10.119
	SRR8316900	Third green stage	28.781
	SRR8316901	Third green stage	28.836
	SRR8316898	Complete white stage	7.818
	SRR8316899	Complete white stage	35.665
	SRR8316903	Complete white stage	11.971
	SRR8316902	Silver flowering stage	2.215
	SRR8316904	Silver flowering stage	4.338
	SRR8316905	Silver flowering stage	1.727
	SRR8316906	Gold flowering stage	5.064
	SRR8316907	Gold flowering stage	4.604
	SRR8316908	Gold flowering stage	4.761
SRP132670	SRR6706286	Control	15.830
	SRR6706287	Light intensity 50%	17.944
	SRR6706288	Light intensity 20%	18.583
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.471
	CNS0095593	Slightly white alabastrum(diploid) 2	36.214
	CNS0095594	Slightly white alabastrum(diploid) 3	27.262
	CNS0095595	Whole white alabastrum(diploid) 2	30.051
	CNS0095596	Whole white alabastrum(diploid) 3	19.530
	CNS0095597	Whole white alabastrum(diploid) 4	31.513
	CNS0095598	Silvery flower (diploied) 1	22.544
	CNS0095599	Silvery flower (diploied) 2	39.115
	CNS0095600	Silvery flower (diploied) 3	18.127
	CNS0095601	Golden flower (diploid) 1	35.746
	CNS0095602	Golden flower (diploid) 2	30.298
	CNS0095603	Golden flower (diploid) 3	29.256
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.257
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.323
	CNS0095606	Slightly white alabastrum(tetraploid) 3	64.578
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.387
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.739
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.822
	CNS0095610	Silvery flower (tetraploid) 1	3.660
	CNS0095611	Silvery flower (tetraploid) 2	6.610
	CNS0095612	Silvery flower (tetraploid) 3	10.971
	CNS0095613	Golden flower (tetraploid) 1	2.804
	CNS0095614	Golden flower (tetraploid) 2	2.797
	CNS0095615	Golden flower (tetraploid) 3	4.362
CRA001975	CRR073297	Stem 1	29.437
	CRR073298	Stem 2	29.250
	CRR073299	Stem 3	26.383
	CRR073300	Leaf 1	36.919
	CRR073301	Leaf 2	31.803
	CRR073302	Leaf 3	28.474
	CRR073303	Juvenile bud 1	35.247
	CRR073304	Juvenile bud 2	38.209
	CRR073305	Juvenile bud 3	31.202
	CRR073306	Third green 1	9.676
	CRR073307	Third green 2	8.010
	CRR073308	Third green 3	9.598
	CRR073309	Second white 1	10.248
	CRR073310	Second white 2	4.809
	CRR073311	Second white 3	7.053
	CRR073312	Silver flowering 1	10.565
	CRR073313	Silver flowering 2	18.426
	CRR073314	Silver flowering 3	12.320
	CRR073315	Gold flowering 1	10.651
	CRR073316	Gold flowering 2	14.318
	CRR073317	Gold flowering 3	20.017
	CRR073318	Tawny withering 1	25.829
	CRR073319	Tawny withering 2	36.332
	CRR073320	Tawny withering 3	22.218