Detail information of GWHGAAZE024987


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010264165.10PREDICTED: 3-phosphoshikimate 1-carboxyvinyltransferase 2 [Nelumbo nucifera]
COGYP_008545903.12E-1403-phosphoshikimate 1-carboxyvinyltransferase
Swissprottr|P11043|AROA_PETHY03-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (Precursor)
trEMBLtr|Q6E6L4|Q6E6L4_CONCD03-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531}
TAIR10AT2G45300.10RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5307277953078020-
GWHAAZE00000007mRNA5307277953078020-
GWHAAZE00000007exon5307277953072997-
GWHAAZE00000007exon5307346753073528-
GWHAAZE00000007exon5307437253074582-
GWHAAZE00000007exon5307505653075173-
GWHAAZE00000007exon5307528453075468-
GWHAAZE00000007exon5307580153075954-
GWHAAZE00000007exon5307673353076977-
GWHAAZE00000007exon5307798853078020-
GWHAAZE00000007CDS5307798853078020-
GWHAAZE00000007CDS5307673353076977-
GWHAAZE00000007CDS5307580153075954-
GWHAAZE00000007CDS5307528453075468-
GWHAAZE00000007CDS5307505653075173-
GWHAAZE00000007CDS5307437253074582-
GWHAAZE00000007CDS5307346753073528-
GWHAAZE00000007CDS5307277953072997-
Transcript Sequence

Network for GWHGAAZE024987

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00275.21EPSP_synthase94022.50E-124
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00800aroA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName
GO:0009073biological_processaromatic amino acid family biosynthetic process
GO:0003866molecular_function3-phosphoshikimate 1-carboxyvinyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.386
SRR3591706second leaf23.236
SRR3591707mature leaf19.018
SRR3591708Shoot apex21.435
SRR3591709Stem92.095
SRR3591710White floral bud55.452
SRR3591711White flower62.697
SRR3591712Green floral bud27.808
SRR3591713Yellow flower84.974
SRP173429 SRR8316895Juvenile bud stage 30.848
SRR8316896Juvenile bud stage 43.512
SRR8316897Juvenile bud stage 14.998
SRR8316894Third green stage 17.942
SRR8316900Third green stage 63.648
SRR8316901Third green stage 61.782
SRR8316898Complete white stage 38.849
SRR8316899Complete white stage 49.620
SRR8316903Complete white stage 59.214
SRR8316902Silver flowering stage46.055
SRR8316904Silver flowering stage59.670
SRR8316905Silver flowering stage34.764
SRR8316906Gold flowering stage 108.855
SRR8316907Gold flowering stage 120.559
SRR8316908Gold flowering stage 123.384
SRP132670SRR6706286Control63.563
SRR6706287Light intensity 50%66.767
SRR6706288Light intensity 20%65.132
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.969
CNS0095593Slightly white alabastrum(diploid) 228.008
CNS0095594Slightly white alabastrum(diploid) 328.450
CNS0095595Whole white alabastrum(diploid) 226.741
CNS0095596Whole white alabastrum(diploid) 330.575
CNS0095597Whole white alabastrum(diploid) 428.760
CNS0095598Silvery flower (diploied) 128.498
CNS0095599Silvery flower (diploied) 229.701
CNS0095600Silvery flower (diploied) 357.115
CNS0095601Golden flower (diploid) 129.250
CNS0095602Golden flower (diploid) 251.121
CNS0095603Golden flower (diploid) 345.399
CNS0095604Slightly white alabastrum(tetraploid) 137.199
CNS0095605Slightly white alabastrum(tetraploid) 231.112
CNS0095606Slightly white alabastrum(tetraploid) 348.042
CNS0095607Whole white alabastrum(tetraploid) 120.156
CNS0095608Whole white alabastrum(tetraploid) 220.639
CNS0095609Whole white alabastrum(tetraploid) 353.876
CNS0095610Silvery flower (tetraploid) 194.866
CNS0095611Silvery flower (tetraploid) 288.784
CNS0095612Silvery flower (tetraploid) 3109.945
CNS0095613Golden flower (tetraploid) 187.671
CNS0095614Golden flower (tetraploid) 2111.031
CNS0095615Golden flower (tetraploid) 383.962
CRA001975CRR073297Stem 157.720
CRR073298Stem 248.109
CRR073299Stem 346.982
CRR073300Leaf 161.983
CRR073301Leaf 265.458
CRR073302Leaf 358.728
CRR073303Juvenile bud 157.800
CRR073304Juvenile bud 270.575
CRR073305Juvenile bud 365.029
CRR073306Third green 1123.429
CRR073307Third green 283.675
CRR073308Third green 384.697
CRR073309Second white 158.119
CRR073310Second white 260.410
CRR073311Second white 375.914
CRR073312Silver flowering 182.911
CRR073313Silver flowering 263.123
CRR073314Silver flowering 385.057
CRR073315Gold flowering 127.955
CRR073316Gold flowering 241.778
CRR073317Gold flowering 335.377
CRR073318Tawny withering 150.429
CRR073319Tawny withering 244.243
CRR073320Tawny withering 352.687